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Detailed information on CNT30604015

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 3e-20

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30678664	Oryza punctata	Setaria viridis	74.74	96.52	98.89	361	forward
CNT30524663	Oryza punctata	Setaria italica	42.24	35.05	99.51	204	reverse complement
CNT30641718	Oryza punctata	Nymphaea colorata	38.92	34.75	94.15	188	reverse complement
CNT30549212	Oryza punctata	Ipomoea triloba	104.55	16.74	91.49	505	reverse complement
CNT30513456	Oryza punctata	Juglans regia	104.55	15.91	91.88	505	reverse complement
CNT30272552	Oryza punctata	Chenopodium quinoa	89.44	34.34	91.2	432	reverse complement
CNT30730494	Oryza punctata	Corchorus capsularis	101.04	55.45	92.01	488	reverse complement
CNT30630109	Oryza punctata	Vigna unguiculata	101.04	15.48	91.8	488	reverse complement
CNT30196906	Oryza punctata	Pisum sativum	68.74	43.86	90.36	332	reverse complement
CNT30494210	Oryza punctata	Olea europaea	22.15	4.38	84.11	107	forward
CNT30294119	Oryza punctata	Triticum aestivum	56.31	99.63	90.81	272	forward
CNT30220355	Oryza punctata	Hordeum vulgare	59.63	96.32	92.01	288	reverse complement
CNT30391333	Oryza punctata	Triticum turgidum	100	80.5	99.59	483	forward
CNT30569398	Oryza punctata	Actinidia chinensis	96.27	23.8	90.97	465	reverse complement
CNT30552690	Oryza punctata	Oryza glaberrima	104.35	32.92	94.64	504	reverse complement
CNT30442196	Oryza punctata	Aegilops tauschii	104.35	59.43	95.44	504	forward
CNT30657980	Oryza punctata	Triticum dicoccoides	83.02	98.28	93.52	401	forward
CNT30460907	Oryza punctata	Saccharum spontaneum	104.35	15.13	95.63	504	reverse complement
CNT3018333	Oryza punctata	Zea mays	104.35	17.65	95.63	504	reverse complement
CNT30207763	Oryza punctata	Helianthus annuus	104.55	54.48	91.88	505	reverse complement
CNT30688674	Oryza punctata	Triticum urartu	104.35	38.27	95.63	504	reverse complement
CNT30720843	Oryza punctata	Triticum spelta	18.01	40.47	97.7	87	reverse complement
CNT30347837	Oryza punctata	Eragrostis tef	91.72	57.46	94.58	443	forward
CNT30363261	Oryza punctata	Sorghum bicolor	42.24	16.03	99.51	204	reverse complement
CNT30620564	Oryza punctata	Cajanus cajan	100.41	9.37	91.96	485	forward
CNT30354697	Oryza punctata	Lactuca sativa	59.63	40.79	97.22	288	reverse complement
CNT30481523	Oryza punctata	Chara braunii	13.46	27.08	95.38	65	forward
CNT30410880	Oryza punctata	Papaver somniferum	104.55	55.74	91.88	505	reverse complement
CNT30642274	Oryza punctata	Cannabis sativa	89.65	53	87.76	433	forward
CNT30319706	Oryza punctata	Asparagus officinalis	98.14	16.49	92.19	474	reverse complement
CNT3036965	Oryza punctata	Cucumis melo	104.55	69.37	91.88	505	reverse complement
CNT30331560	Oryza punctata	Dioscorea rotundata	36.44	34.85	96.02	176	reverse complement
CNT30148090	Oryza punctata	Brachypodium distachyon	104.35	17.35	95.63	504	forward
CNT30104374	Oryza punctata	Oryza rufipogon	104.35	37.95	94.25	504	forward
CNT30576813	Oryza punctata	Oryza barthii	22.98	15.06	100	111	reverse complement
CNT30174498	Oryza punctata	Vigna angularis	38.92	37.23	94.15	188	reverse complement
CNT30551087	Oryza punctata	Oryza brachyantha	55.49	89.93	98.88	268	forward

Expression of CNT30604015

Peptides detected in this lncRNA

>peptide 1 (70 aa)
HPRMGGEPVAVSAVLPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRGASFPVLSML*

>peptide 2 (58 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGKISLLSLE*

>peptide 3 (52 aa)
PSPYGWRTRRCLGCATGGSREVGGESTHLGVGLLLICFQQLSSPHLATQRLP*

>peptide 4 (49 aa)
MLSAVILSALGYPAFTVGTITGTPEVRPSRSSQCSNAHTGYGPNCLTTF*

Sequence

>CNT30604015
CCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTAC
TACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCC
TCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCT
TGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAG
AGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTGCTCGACGGG