Detailed information on CNT30720843


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675387Triticum speltaSetaria viridis10052.9694.42215forward
CNT30524663Triticum speltaSetaria italica10036.9499.07215forward
CNT30641718Triticum speltaNymphaea colorata105.5841.9684.58227forward
CNT30549212Triticum speltaIpomoea triloba94.886.7683.82204forward
CNT30272552Triticum speltaChenopodium quinoa23.263.9710050forward
CNT30195089Triticum speltaPisum sativum35.814.4390.9177reverse complement
CNT30294119Triticum speltaTriticum aestivum29.323.0898.4163reverse complement
CNT30220801Triticum speltaHordeum vulgare10055.4199.53215forward
CNT30396824Triticum speltaTriticum turgidum10021.3599.07215reverse complement
CNT30569398Triticum speltaActinidia chinensis93.0210.2486200forward
CNT30511593Triticum speltaSolanum lycopersicum23.267.689650forward
CNT30442196Triticum speltaAegilops tauschii10025.3599.53215reverse complement
CNT30660220Triticum speltaTriticum dicoccoides61.438.9499.24132reverse complement
CNT303548Triticum speltaZea mays10015.199.07215reverse complement
CNT30215429Triticum speltaHelianthus annuus93.0228.4186200forward
CNT30688674Triticum speltaTriticum urartu10016.3299.53215forward
CNT30347837Triticum speltaEragrostis tef99.5327.7698.6214reverse complement
CNT30363261Triticum speltaSorghum bicolor10016.8999.07215forward
CNT30620564Triticum speltaCajanus cajan93.493.8884.08201reverse complement
CNT30596724Triticum speltaOryza meridionalis1008.8998.6215reverse complement
CNT30410880Triticum speltaPapaver somniferum105.5825.0685.46227forward
CNT30642274Triticum speltaCannabis sativa23.266.129650reverse complement
CNT3037013Triticum speltaCucumis melo93.0225.4585.5200reverse complement
CNT30331560Triticum speltaDioscorea rotundata88.3737.6283.68190reverse complement
CNT30104431Triticum speltaOryza rufipogon10033.1897.21215reverse complement
CNT30497700Triticum speltaDigitaria exilis53.9521.21100116reverse complement
CNT30604015Triticum speltaOryza punctata40.4718.0197.787reverse complement
CNT30174415Triticum speltaVigna angularis93.4938.6585.07201reverse complement
CNT30551087Triticum speltaOryza brachyantha54.4239.2697.44117reverse complement
CNT30115272Triticum speltaEutrema salsugineum23.2610.299650forward

Expression of CNT30720843

SRR9114152: 12.53 RPKM

Peptides detected in this lncRNA

>peptide 1 (37 aa)
KMSALSSDFPRAFGITAETATGSPPIRGWSDRSMEIG*

Sequence

>CNT30720843
AAGATGAGTGCTCTCTCCTCCGACTTCCCTAGAGCCTTCGGTATCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGTA
TGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGAT
TTGAACCTTGTTCCT