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Detailed information on CNT30442196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Aegilops tauschiiSetaria viridis45.1794.3398.17383forward
CNT30524663Aegilops tauschiiSetaria italica45.466.1599.48385reverse complement
CNT30641718Aegilops tauschiiNymphaea colorata47.6474.6890.84404reverse complement
CNT30549212Aegilops tauschiiIpomoea triloba97.8827.5193.01830reverse complement
CNT30270599Aegilops tauschiiChenopodium quinoa97.0550.5592.1823reverse complement
CNT30730494Aegilops tauschiiCorchorus capsularis93.2889.8993.3791reverse complement
CNT30630109Aegilops tauschiiVigna unguiculata100.5927.0692.73853reverse complement
CNT30632746Aegilops tauschiiCapsicum annuum20.5224.0793.1174forward
CNT30294119Aegilops tauschiiTriticum aestivum32.0899.6398.9272forward
CNT30220801Aegilops tauschiiHordeum vulgare35.9778.61100305reverse complement
CNT30396824Aegilops tauschiiTriticum turgidum85.2671.899.17723forward
CNT30569398Aegilops tauschiiActinidia chinensis71.5831.0692.42607reverse complement
CNT30552690Aegilops tauschiiOryza glaberrima99.6555.1998.58845reverse complement
CNT30657980Aegilops tauschiiTriticum dicoccoides47.2998.2898.75401forward
CNT303548Aegilops tauschiiZea mays99.6559.3499.41845forward
CNT30205642Aegilops tauschiiHelianthus annuus97.1779.6193.81824reverse complement
CNT30688674Aegilops tauschiiTriticum urartu91.9859.2399.87780reverse complement
CNT30720843Aegilops tauschiiTriticum spelta25.3510099.53215reverse complement
CNT30347837Aegilops tauschiiEragrostis tef67.9274.7199.13576forward
CNT30363261Aegilops tauschiiSorghum bicolor43.2828.8399.18367reverse complement
CNT30620564Aegilops tauschiiCajanus cajan81.2513.3192.45689forward
CNT30354697Aegilops tauschiiLactuca sativa41.0449.2997.13348reverse complement
CNT30481523Aegilops tauschiiChara braunii7.6727.0895.3865forward
CNT30410483Aegilops tauschiiPapaver somniferum100.9441.8493.81856reverse complement
CNT30642274Aegilops tauschiiCannabis sativa68.1670.7592.73578forward
CNT30319706Aegilops tauschiiAsparagus officinalis80.5423.7695.9683reverse complement
CNT3036965Aegilops tauschiiCucumis melo77.4890.2592.69657reverse complement
CNT30331560Aegilops tauschiiDioscorea rotundata20.7534.8595.45176reverse complement
CNT30150154Aegilops tauschiiBrachypodium distachyon98.3572.998.92834reverse complement
CNT30104374Aegilops tauschiiOryza rufipogon99.6563.6398.34845forward
CNT30576813Aegilops tauschiiOryza barthii23.2326.7398.98197reverse complement
CNT30497700Aegilops tauschiiDigitaria exilis14.2722.12100121forward
CNT30604015Aegilops tauschiiOryza punctata59.43104.3595.44504forward
CNT30174498Aegilops tauschiiVigna angularis44.3474.4689.1376reverse complement
CNT30551087Aegilops tauschiiOryza brachyantha37.62107.0591.85319forward

Expression of CNT30442196

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSVWPEETFARLRYLLGGLRPIETVYLRLSLGPRV*

>peptide 2 (58 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRYRGAKPSRRCGLLGKISLLSLE*

>peptide 3 (56 aa)
MLSAVILSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 4 (66 aa)
MGGEPVAVSAVIPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRGASFPVLSY*

Sequence

>CNT30442196
GGCCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACGGCTCGTCTC
GCCGCTACCTTATCCTATTTCCATACTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGATACCGGAGGCTCTAGGGAAG
TCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCACG
ATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTC
TCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGATATCGAG
GTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACC
GTCGGATCACTAAGGCCGACTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCAATGTCCGTCTGGCC
CGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTCTGACACAAG
GTTAGAATCCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGC