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Detailed information on CNT30220355


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Hordeum vulgareSetaria viridis96.3270.9497.57288reverse complement
CNT30641718Hordeum vulgareNymphaea colorata63.2134.9497.88189forward
CNT30549212Hordeum vulgareIpomoea triloba94.989.4196.13284forward
CNT30272552Hordeum vulgareChenopodium quinoa94.9822.5895.42284forward
CNT30730494Hordeum vulgareCorchorus capsularis94.9832.2796.48284forward
CNT30384830Hordeum vulgareTriticum turgidum96.3249.0698.61288forward
CNT30569398Hordeum vulgareActinidia chinensis94.9814.5396.48284forward
CNT30657980Hordeum vulgareTriticum dicoccoides96.3270.5998.26288reverse complement
CNT30215429Hordeum vulgareHelianthus annuus94.9840.3496.48284forward
CNT30620564Hordeum vulgareCajanus cajan94.985.4995.77284reverse complement
CNT30354697Hordeum vulgareLactuca sativa54.8523.2395.73164forward
CNT30410880Hordeum vulgarePapaver somniferum94.9831.3596.13284forward
CNT30642274Hordeum vulgareCannabis sativa95.3234.8891.58285reverse complement
CNT3036965Hordeum vulgareCucumis melo94.9839.0196.48284forward
CNT30604015Hordeum vulgareOryza punctata96.3259.6392.01288reverse complement
CNT30174525Hordeum vulgareVigna angularis58.8633.5996.02176reverse complement

Expression of CNT30220355

Peptides detected in this lncRNA

>peptide 1 (82 aa)
SSRLFATWSCRWFQGLGCSPINAVRELGSERREIVRSISGVGVRELRGPFPSTRGPGRTHLWCTSYRAYGKRWVAKCGEDNC*

>peptide 2 (33 aa)
LAGSSPPGAVGGSKGWAVRPLMRYVSWVQNVVR*

Sequence

>CNT30220355
TCTAGCCGGCTCTTCGCCACCTGGAGCTGTAGGTGGTTCCAAGGGTTGGGCTGTTCGCCCATTAATGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGA
TAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGAATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCG
TGCCTACGGTAAACGCTGGGTAGCCAAGTGCGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCTGCCAG