Detailed information on CNT303548


BLAST search results

BLAST vs Swiss-Prot:
sp|P48190|MATK_MAIZE, E-value = 2e-83

BLAST vs NONCODE:
NONMEST004927, E-value = 6e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641718Zea maysNymphaea colorata30.279.4890.7430reverse complement
CNT30549212Zea maysIpomoea triloba66.2231.2692.36943reverse complement
CNT30616211Zea maysSesamum indicum9.9728.5786.62142forward
CNT30730494Zea maysCorchorus capsularis57.3792.8492.9817reverse complement
CNT30632746Zea maysCapsicum annuum12.1523.9393.06173forward
CNT30294119Zea maysTriticum aestivum19.199.6398.16272forward
CNT30552690Zea maysOryza glaberrima72.4767.4198.061032reverse complement
CNT30442196Zea maysAegilops tauschii59.2799.5399.41844forward
CNT30205642Zea maysHelianthus annuus66.2291.1193.64943reverse complement
CNT30688674Zea maysTriticum urartu56.3960.9799.38803reverse complement
CNT30720843Zea maysTriticum spelta15.110099.07215reverse complement
CNT30481523Zea maysChara braunii4.5627.0895.3865forward
CNT30331560Zea maysDioscorea rotundata12.3634.8595.45176reverse complement
CNT30150154Zea maysBrachypodium distachyon60.1874.9198.48857reverse complement
CNT30104374Zea maysOryza rufipogon68.9673.9598.07982forward
CNT30174498Zea maysVigna angularis27.8878.6188.66397reverse complement
CNT30551087Zea maysOryza brachyantha22.4107.0591.85319forward

Expression of CNT303548

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSVWPEETFARLRYLLGGLRPIETVYLRLSLGPRV*

>peptide 2 (32 aa)
MARAPPKGGLLRLPPKLRRKSPKPIPGNSKAS*

>peptide 3 (47 aa)
MKVEVYILVDTKSVFSKIHYDNEKYFYISDQNDQEYPNLINQSKRVY*

>peptide 4 (56 aa)
MLSAVILSTLGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 5 (58 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGKISLLSLE*

>peptide 6 (66 aa)
MGGEPVAVSAVLPEALGKSEERALILGWAYYLYAFSSYPLHTWLPSVYRRHDNWYTRGASFPVLSY*

Sequence

>CNT303548
ATCCAAATACCAAATACGCTCACTGTGTGATCCATGGAAAGAAAAGTGAATTGTTTTGGTGAACATCAAAGAAAAAACTTGCTCTTCTTCCGTAAAAAAT
TCTTCTAAAAATACCGAACCCAATCGTTGCATAAAAGTTCGTACCGTACTTTTATGTTTACGAGCTAAAGTTCTAGCACATGAAAGTCGAAGTATATATT
TTAGTCGATACAAAGTCTGTTTTTTCGAAGATCCACTATGATAATGAAAAATATTTCTACATATCCGACCAAAACGATCAAGAATATCCCAATCTGATAA
ATCAGTCCAAACGGGTTTACTAATAGGATGCCCCGATCCAGTACAAAATTGAGCTTTTGATAAGGATCCGACAAGGGGAGTTGCAAGGACTCAAGTGCCT
GATCGATTTGATCAGGTCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATTT
AAACGGCTCGTCTCGCCGCTACCTTATCCTATTTCCATACTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGG
AGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCGT
TTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATA
TGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAACCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAA
GAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGACCC
TTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA
ATGTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGC
GGGTCTGACACAAGGTTAGAATCCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGAAAGGGGGCCTTCTTCGCCTTCCACCTAAGC
TGCGCAGGAAAAGCCCAAAGCCAATCCCAGGGAACAGTAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT
TTCACCGAGCCTCTCTCCGAGACT