Detailed information on CNT30660220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 8e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524663Triticum dicoccoidesSetaria italica87.6151.0398.99297reverse complement
CNT30641718Triticum dicoccoidesNymphaea colorata81.4251.0293.12276reverse complement
CNT30294119Triticum dicoccoidesTriticum aestivum79.6598.998.15270forward
CNT30720843Triticum dicoccoidesTriticum spelta38.9461.499.24132reverse complement
CNT30363261Triticum dicoccoidesSorghum bicolor82.321.9298.57279reverse complement
CNT30596724Triticum dicoccoidesOryza meridionalis77.5810.8798.86263forward
CNT30331560Triticum dicoccoidesDioscorea rotundata51.9234.8594.89176reverse complement
CNT30174498Triticum dicoccoidesVigna angularis72.2748.5192.24245reverse complement
CNT30551087Triticum dicoccoidesOryza brachyantha94.1107.0591.22319forward

Expression of CNT30660220

Peptides detected in this lncRNA

>peptide 1 (67 aa)
ARLAATLSYFHTSVAPSPYGWRTRRCLGCDTGGSREVGGESTHLGVGLLLICFQQLSSPHLATQRLP*

>peptide 2 (56 aa)
MLSAVILSALGYPTFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCVTTF*

>peptide 3 (84 aa)
LVSPLPYPISILLSLHPRMGGEPVAVSAVIPEALGKSEERALILGWAYYLYAFSSYPLRTWLPNVYRRHDNWYTRGASFPVLSY*

Sequence

>CNT30660220
GCTCGTCTCGCCGCTACCTTATCCTATTTCCATACTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGATACCGGAGGCT
CTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAACGTTTACC
GTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGAC
CGAACTGTGTCACGACGTTCTGAACCCAGCTCACGTACC