Detailed information on CNT30439638


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Aegilops tauschiiOryza sativa44.5942.7788.24136forward
CNT30297476Aegilops tauschiiTriticum aestivum10010099.34305forward
CNT30664085Aegilops tauschiiTriticum dicoccoides101.97100.3292.28311forward
CNT3059713Aegilops tauschiiArabidopsis lyrata22.6222.4886.9669forward
CNT3066721Aegilops tauschiiLeersia perrieri41.9740.8990.62128forward
CNT30108933Aegilops tauschiiOryza longistaminata44.2643.5589.63135forward

Expression of CNT30439638

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRKLRPLSPSSGRHRVRLVSQSSAHCPLPTVEG*

>peptide 2 (46 aa)
PSSVTRACHPGGGVKVVLDVWCGLWTWACVVTLLACPVQVGSGLWC*

>peptide 3 (30 aa)
RAQSRELVTQVGALRWCWMFGVDSGPGLVL*

Sequence

>CNT30439638
GCCGAGCTCAGTCACGAGAGCTTGTCACCCAGGTGGGGGCGTTAAGGTGGTGTTGGATGTTTGGTGTGGACTCTGGACCTGGGCTTGTGTTGTAACATTG
CTGGCTTGCCCGGTCCAAGTTGGTAGTGGGCTGTGGTGCTGATGCGAAAGCTTCGGCCTCTCAGTCCTTCAAGTGGCAGGCACCGCGTTAGGCTGGTTTC
ACAGAGCAGCGCTCACTGTCCTCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACCATGGGCCCGCTCTGGTTTAGAGTCCTTCCATAACAGACCACCA
TCTTT