Detailed information on CNT3021011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059713Citrullus lanatusArabidopsis lyrata11.3120.5288.8963forward
CNT30623316Citrullus lanatusDaucus carota13.642586.8476forward
CNT30478496Citrullus lanatusArabidopsis halleri11.3129.4488.8963forward
CNT3024649Citrullus lanatusPopulus trichocarpa13.4624.838875forward
CNT3050501Citrullus lanatusCucumis sativus44.5281.3181.45248forward

Expression of CNT3021011

Peptides detected in this lncRNA

>peptide 1 (41 aa)
PSSVVRACNLNEGTNVVGGWSGPCCRVSSGYSLACPFQVRS*

>peptide 2 (41 aa)
MFSLVCLSLSYKFSTFYIILLQIENKAKNDKSLTSFCFCLFF

Sequence

>CNT3021011
CGCCGAGCTCGGTAGTGCGAGCTTGTAACTTGAACGAGGGCACTAATGTGGTTGGAGGCTGGTCCGGTCCATGTTGTAGGGTCTCCTCCGGATACTCTCT
GGCCTGCCCGTTCCAAGTAAGGAGTTGAGCCTTGGGCTTTGGGCGAAGGCCTAGAGTTCATTGCTCATAGAGATTGGTGGGCACCGCGTGAGGCTGGTTT
CACAGAGCAGCGTTACCATCCTCTCCTTTCGGTGGAAGGATAACAGGCTGGTTCCTGGTGGCCCAAAAATGCTCCGTGGATAGCTCTCAGCCCGACAACA
ACATTTTTTGAAAATCAACCAAGACTTCTTCGAATTTCGCGTGGATATCCATTACAAAATTTCACATTATGATGGAGGGTGGATCCATTTGATAATTTTC
CTGTTTGTCTTAAAATTAGTTTCATCAATTATGTTCTCACTTGTTTGTCTCTCTCTCTCGTACAAATTTTCCACTTTTTATATTATATTATTACAAATAG
AAAACAAAGCAAAGAACGATAAATCGTTAACTAGTTTCTGTTTTTGTCTATTTTTTT