Detailed information on CNT30577348


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379142Oryza barthiiManihot esculenta63.8117.5682.32164forward
CNT30524942Oryza barthiiPhaseolus vulgaris53.3120.4284.67137forward
CNT30195835Oryza barthiiPisum sativum53.754.3384.78138forward
CNT30710529Oryza barthiiGlycine max54.862586.52141forward
CNT3042412Oryza barthiiPrunus dulcis60.3120.9285.16155forward
CNT30591949Oryza barthiiMusa acuminata54.0928.684.17139forward
CNT3087851Oryza barthiiVigna radiata45.1412.6985.34116forward
CNT30554593Oryza barthiiOryza glaberrima10080.31100257forward
CNT30648676Oryza barthiiRosa chinensis41.6314.3685.98107forward
CNT30574226Oryza barthiiVitis vinifera49.8125.6586.72128forward
CNT30584421Oryza barthiiEchinochloa crusgalli44.7514.2788.7115forward
CNT30497803Oryza barthiiDigitaria exilis68.8724.6285.88177forward

Expression of CNT30577348

Peptides detected in this lncRNA

>peptide 1 (55 aa)
NLVKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNLEM*

Sequence

>CNT30577348
GTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGT
GAAGTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGC
TTGGAGATGTTGGCGAGTATGATGGACTGGTAGGCGAGTATGACGGACTGGTAGGTG