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Detailed information on CNT30379142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316024Manihot esculentaCorylus avellana32.3337.5285.76302forward
CNT30267777Manihot esculentaChenopodium quinoa19.4944.9481.87182forward
CNT30195835Manihot esculentaPisum sativum19.2770.8780.56180forward
CNT30554593Manihot esculentaOryza glaberrima17.5651.2582.32164forward
CNT30668234Manihot esculentaTriticum dicoccoides32.1251.0279.67300forward
CNT30312316Manihot esculentaCamelina sativa39.6198.9379.73370forward
CNT3016764Manihot esculentaZea mays15.9526.5181.88149forward
CNT30625703Manihot esculentaDaucus carota53.145.7178.83496forward
CNT30366537Manihot esculentaSorghum bicolor23.0224.6680215forward
CNT30620207Manihot esculentaCajanus cajan51.9322.5782.68485forward
CNT3023412Manihot esculentaPopulus trichocarpa15.5225.6686.21145forward
CNT30577348Manihot esculentaOryza barthii17.5663.8182.32164forward
CNT30497803Manihot esculentaDigitaria exilis20.1326.1583.51188forward

Expression of CNT30379142

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGYSLVRLDCNQGMSGYKQVKWDYILEM*

>peptide 2 (29 aa)
MSTVSSNEHLINGPVSFRLIPWRVIAIKWP

Sequence

>CNT30379142
ATAATTTGGAGACGTGGGGCTGTAAGGACTCGACGGTGACAATCTTGGACTGCTAGGTGAGTATGCCAGTGACGGACTGTATTTAGCTGACTGAGGATTG
TAACTGGGTGAGGTCGGGCTATAGCTTGGCGATGTTGGGCTATAGCTTGGTGAGGTTGGACTGTAACCAGGGGATGTCGGGCTATAAGCAGGTGAAGTGG
GACTATATACTGGAGATGTAGGGCTATAGCTTGGTGAAGTTGGGCTGTAACTGGGAGATGTGGGGCTATAGCTTGGAGAGGTTGGACTATAACTTGGAGA
TGTTGGGCTATAGCTGGGAGAAGTTGGGCTGTAACTAGGGGAAGTTGGGGAATACGATGGACTTGTAGGAGAATAGGCAGGACTGGTAGGGCTATAGCCA
GGAGAACTAGGGCTATAAGTTGGCGAAGTTGGGCTGTATCCAGGTGAGGTGGGGCTATAACCAGGGGATGATGGACTGTAACCAGGGGATGATGGGCTAT
AGCCTGGAGATGAAGTAGGAGAGAAAGCCATTCCACCTACATATGGTGAGAACTGAGCATCTGTAATGGGTGAAAGGCGAAGACTAGGGCTCAGTAAATA
ACTTGGAGACATCATGCCCTCATGGTAAGGTGTCCCTGAGACTGGGGAACGTGCAGGAGTCATGCCGAAATCCAGGCCATCCATATAACTGGGGAGCTGA
AGTTCAATGGCATTCTTCAACATTTCATCATTGAGATACAAAGAACAACCTCCTGTGCCAATTGGTGCAAGCTGACCAAGCATAATATTTTCAGTGACAC
CTCTCAAATGATCAGTTTCAGCAAACACTGCAGCATCAAGAAGAATGTCTACGGTCTCTTCAAACGAGCATCTCATTAATGGCCCAGTGTCATTCCGATT
GATACCATGGCGGGTGATTGCCATCAAATGGCCA