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Detailed information on CNT30497803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Digitaria exilisSetaria italica86.0910092.08619forward
CNT30616396Digitaria exilisSesamum indicum35.6150.279.69256forward
CNT30379142Digitaria exilisManihot esculenta26.1520.1383.51188forward
CNT30591949Digitaria exilisMusa acuminata24.7636.6383.15178forward
CNT30668234Digitaria exilisTriticum dicoccoides59.9473.381.67431forward
CNT30312316Digitaria exilisCamelina sativa31.9961.583.04230forward
CNT30263845Digitaria exilisBrassica rapa29.4960.5782.08212forward
CNT30688678Digitaria exilisTriticum urartu59.9468.8581.21431forward
CNT3027690Digitaria exilisTheobroma cacao18.2253.2583.21131forward
CNT30150023Digitaria exilisBrachypodium distachyon66.6263.8784.76479forward
CNT30577348Digitaria exilisOryza barthii24.6268.8785.88177forward

Expression of CNT30497803

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGCNLEMWASMMDWLASKLDLLGSNSGL*

>peptide 2 (33 aa)
MDCIPLMMESSHLATGKVRMPCAQHMVRTKHLC*

>peptide 3 (35 aa)
CNLEKSDCMVSSSGCLESKHAKGCTWLKKDCSLEK*

Sequence

>CNT30497803
CTGTAATTTGGAGAAGTCTGACTGTATGGTGTCATCCTCGGGCTGCTTGGAGAGTAAGCATGCGAAGGGCTGTACTTGGCTGAAGAAGGATTGTAGCTTG
GAGAAGTAGGACTGTAGCTTGGCGATGTCGGGCTGTAGCTTGGTGATGTTGGGCTGTATCCAGGAGAGGTAGGGCTATATGCAGGCGAGGTTGGACTATA
AACTGGCGAGGTGGGGCTGTAGCTTGGGGATGTAGGACTGTAGCTCGGAGATGTTGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTGGGAGATGTTGGG
CTGTAACTTGGAGATGTGGGCGAGTATGATGGACTGGTTGGCGAGTAAGTTGGACTTGTTGGGGAGTAATTCGGGCTTGTAGGACTGTAAGTGGGAGAGC
CAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGTGAAGCAGGGCTGTATGATGGAGAAAGCGGGCTATATCCTTTTTCTGGGGTGAAAACTGGAGA
AGATGGACTGTATCCCCCTGATGATGGAGAGTAGCCACCTGGCGACGGGAAAGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTG
TTAATGGGGGAAGCCCTGATGTTCGGACTCAGCAGATAACTTGGCGACATCATTCCTTCATGATATGGTGTCCCAGAGATGGGTGAACGTGCTGGTGTCA
TGCCAAAGTCCAAACCTTC