Detailed information on CNT30392820


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03683|BIP3_TOBAC, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Triticum turgidumOryza sativa40.589.0588.67309forward
CNT30223130Triticum turgidumHordeum vulgare14.9445.2498.25114forward
CNT3067065Triticum turgidumLeersia perrieri22.0239.5391.67168forward
CNT30683744Triticum turgidumTriticum urartu16.7828.799.22128forward
CNT30361391Triticum turgidumSorghum bicolor48.8944.5689.01373forward
CNT30621132Triticum turgidumCajanus cajan15.620.3488.24119forward
CNT3056582Triticum turgidumAmborella trichopoda2731.9481.07206forward

Expression of CNT30392820

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSSLLSRPLSLVIVILFFCPDTVGINVKAHGDLGDTPGRRWDPGELELAEQVVVLGPRPLALIHLDEHAGLVV

>peptide 2 (47 aa)
MSKHTVIWGTPLGAGGIPESSNLPSRLLSLVLALSPSYTWMSTPGWLS

>peptide 3 (75 aa)
MPPGISAPAPWYILAMMGLQMPSSSFLLSSNSSASASWLLSSQVMAPSIASSIFFLSASGSLEAILSSLMVLRML*

>peptide 4 (35 aa)
MYICPNEKLQNDTRIHRTMKDTLFKQNSRRSKSII*

Sequence

>CNT30392820
CTAAATAATCGTGTTTCAATATCAACTTAAACATAAGATGGGGCAATGTATATATGCCCGAACGAAAAACTGCAGAACGATACTAGAATCCACCGTACAA
TGAAAGACACATTATTCAAGCAGAATAGTAGGCGATCTAAATCTATCATTTAGTCGACCTCCTCAATCTTGGGCCCTGGGCCGCTGCTGCCGCCTGCGGC
ACTGGCCGGAGCATCCTCATCCATGCCACCAGGCATTTCAGCGCCGGCACCCTGGTACATCTTGGCGATGATGGGGTTGCAAATGCCCTCCAGCTCTTTC
CTCTTGTCATCAAACTCTTCAGCCTCGGCGAGCTGGTTGTTGTCGAGCCAGGTGATGGCACCATCAATAGCATCCTCGATCTTCTTCTTGTCGGCCTCTG
GGAGCTTGGAGGCGATCTTGTCATCCTTGATGGTGTTACGCATGTTGTAAGCGTAGTTCTCCAGGGCGTTCTTGGAGTCCACCTTCTTCTTGTGCTCCTC
GTCCTCAGCCTTGTACTTCTCGGCCTCCTGCACCATCTTCTCGATGTCCTCCTTGCTCAGCCGTCCCTTGTCGTTGGTAATTGTGATCTTGTTCTTCTGT
CCGGATACCGTTGGCATCAATGTCAAAGCACACGGTGATCTGGGGGACACCCCTGGGCGCCGGTGGGATCCCGGAGAGCTCGAACTTGCCGAGCAGGTTG
TTGTCCTTGGTCCTCGCCCTCTCGCCCTCATACACCTGGATGAGCACGCCGGGCTGGTTGTCA