CANTATAdb - search

Detailed information on CNT30554238

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENE4|CYB6_ORYNI, E-value = 6e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30730483	Oryza glaberrima	Corchorus capsularis	14.01	34.01	90	150	forward
CNT30504292	Oryza glaberrima	Nicotiana attenuata	64.61	38.79	89.31	692	forward
CNT3090412	Oryza glaberrima	Solanum tuberosum	27.08	13.13	90	290	forward
CNT30193370	Oryza glaberrima	Secale cereale	98.32	65.2	94.49	1053	forward
CNT30543576	Oryza glaberrima	Brassica napus	60.97	56.98	89.89	653	forward
CNT30439089	Oryza glaberrima	Aegilops tauschii	98.32	64.76	93.92	1053	forward
CNT30667320	Oryza glaberrima	Triticum dicoccoides	52.01	93.14	95.51	557	forward
CNT30655369	Oryza glaberrima	Rosa chinensis	65.17	24.17	90.11	698	forward
CNT30210627	Oryza glaberrima	Helianthus annuus	64.61	58.74	90.17	692	forward
CNT30357898	Oryza glaberrima	Lactuca sativa	64.61	34.67	90.03	692	forward
CNT30422352	Oryza glaberrima	Papaver somniferum	44.07	56.39	90.04	472	forward
CNT3035458	Oryza glaberrima	Cucumis melo	64.61	37.53	88.87	692	forward
CNT30556546	Oryza glaberrima	Panicum hallii	35.76	100	90.86	383	forward

Expression of CNT30554238

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRCLPYKGPEIPCLRIIRKCININTAVSRGSTKVCKL*

>peptide 2 (49 aa)
MRRNIFTSYIICNCLNLKTFLKPIIYFTHIPEIPKPKNSTVELPECLEM*

Sequence

>CNT30554238
CAATAATTCAAGTCGCACACTCCCATAATCCGCCTTCTTTTCTTTCGTAAAATTAACTTCAACTATTTGTATTATTTGTATCACAATAGTTCGGAGTTGA
AGAGAAGTATCTAAATGACATGTCTTATTTTAGAATAACCCATGTTTGTAGCAATGAAATACCACAACCTACCCGATATGATATATGAGAATTAGAACTC
TCTATGAGATGCCTTCCTTATAAAGGGCCCGAAATACCTTGCTTACGTATCATTAGAAAGTGCATTAACATAAATACGGCAGTAAGCAGAGGAAGTACAA
AGGTATGTAAACTATAAAAACGAGTCAAAGTGGATTGACCCACACTAGCACTTCCACGTAATAACTCCACTAAAGGTGATCCTATTACCGGAATCGCGTC
AGGCACACCTGTCACAATTTTGACTGCCCAATAACCAATTTGATCCCAAGGTAAAGAATAACCAGTTACACCAAACGATGCAGTTAATACAGCTAAAACC
ACACCAGTGACCCAAGTTAATTCGCGGGGTTTTTTAAACCCACCTGTGAGATACACACGAAATACGTGCAGGATCATCATTAGAACCATCATACTTGCTG
ACCATCGATGAACTGATCGGATTAACCAACCAAAGTTGGCCTCGGTCATTATGTATTGAACCGAGGAAAAAGCCTCTGTAACGGTTGGGCGATAGTAAAA
AGTCATAGCAAAACCGGTAGCAACTTGTACTAGAAAACAAGTAAGTGTAATTCCCCCTAAACAATAAAATATGTTGACATGAGGAGGAACATATTTACTA
GTTATATCATCTGCAATTGCCTGAATCTCAAGACGTTCCTCAAACCAATCATATACTTTACTCATATTCCAGAGATACCGAAACCAAAAAATTCCACGGT
CGAACTACCAGAATGTCTAGAAATGTAGAGCTTAAAGTAGAAAGGCTCTTTTGGATGGAAAAACTATGACTTCGTAGTTTTCGTTAGTAGAAACCTAATT
CATTAAAATTCCGTCCAGTAAAACGGAAGAATTATAAATTTCTAAAATAATAGATAGGAATACCGCGAATA