Detailed information on CNT30116714


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004583, E-value = 5e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Oryza nivaraSetaria italica42.4752.4990.21327forward
CNT3020382Oryza nivaraCitrullus lanatus18.8329.0690.34145forward
CNT30555990Oryza nivaraOryza glaberrima5024.54100385forward
CNT30436372Oryza nivaraAegilops tauschii35.0640.1292.59270forward
CNT30208139Oryza nivaraHelianthus annuus19.3543.9589.26149forward
CNT30688963Oryza nivaraTriticum urartu41.5678.6291.56320forward
CNT30366171Oryza nivaraSorghum bicolor31.5622.2988.48243reverse complement
CNT3054279Oryza nivaraAmborella trichopoda19.4822.1986.67150forward

Expression of CNT30116714

Peptides detected in this lncRNA

>peptide 1 (60 aa)
RFWDRRLLKNLFHSLVMCGKIEIKCHRSLRLRRKLDKVLQIQSTEKYLELLPRALLPNLE*

>peptide 2 (35 aa)
LLGPETLEKSFPFFGYVWKDRNKMPPKPKTAEEIR*

>peptide 3 (33 aa)
MVSKIEILHFYLWGHSRGRGKSMNLIQLVFLIL*

Sequence

>CNT30116714
CGCTTCTGGGACCGGAGACTCTTGAAAAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGCCACCGAAGCCTAAGACTGCGGAGGA
AATTAGATAAAGTACTCCAGATACAAAGTACGGAAAAGTATCTAGAACTTCTCCCCCGGGCCCTACTCCCCAACCTAGAGTAGCTAAGTGCGGAAGTAAA
ATCAACCCTTGTTCATACATGGGTTTTTCTGGTACGAAATGGGCCACTTCAAATAGGTTCATTGCTCCGGCCCAGAATACGATTAATCCTGCATGGGCTA
CGTGAGCTCCAAGTAGTTTACCCGACAAATTGATAAGTCTGGCATTCCCGGCCCACCAAGCAAAACCGGCCAGACCATCCTACAAAAACAAAACGGTCCC
TTCGTAACCAGTCGTCCATAATATCAAATAAATCATTTTCTTCTTTAGTAACTCTACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAATTACTTCAA
CCATTTCCGAGCACCTTATATCACTTCCAAGGCATACGATAGATTATCTGTGGACGATTTTTTCTCGTTCAATGCCTTTTTTCAATGGTCTCGAAGATAG
AAATTTTGCATTTTTATCTATGGGGTCACAGCCGAGGTCGTGGTAAATCCATGAATTTGATTCAATTAGTTTTTCTTATACTATAGAAATAAACATTGGA
ATTCAGGATTATTCCATGATTCCTATTTCCAAGAAAGCCTATTTTTTAAGGGAAAAATGAAAAAAAGTAA