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Detailed information on CNT30496219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671443Digitaria exilisSetaria viridis64.162096.55145forward
CNT30520455Digitaria exilisSetaria italica76.9932.7191.38174forward
CNT30708597Digitaria exilisGlycine max47.3521.482.24107forward
CNT30288773Digitaria exilisTriticum aestivum33.6329.0196.0576forward
CNT30220915Digitaria exilisHordeum vulgare34.0733.9294.8177forward
CNT30555842Digitaria exilisOryza glaberrima26.5517.2996.6760forward
CNT30658632Digitaria exilisTriticum dicoccoides62.3918.2693.62141forward
CNT303496Digitaria exilisZea mays64.1656.8696.55145forward
CNT30651400Digitaria exilisRosa chinensis32.7415.2685.1474forward
CNT30126375Digitaria exilisCorymbia citriodora41.5928.7586.1794forward
CNT30680526Digitaria exilisTriticum urartu51.7721.1693.16117forward
CNT30619887Digitaria exilisCajanus cajan40.2735.1483.5291forward
CNT30556737Digitaria exilisPanicum hallii60.1829.598.53136forward
CNT3050430Digitaria exilisCucumis sativus29.6518.8789.5567forward

Expression of CNT30496219

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MARRPFLISLVRSSLIFSGEPLPQPSGSNHRPPGYLNYFLHFQHTDEYM

>peptide 2 (32 aa)
DVCAVWIDVLAHLRPGRWWRDRGRRAWRGGRS*

Sequence

>CNT30496219
GTGACGTATGTGCAGTGTGGATTGATGTTCTGGCTCATCTGAGACCTGGAAGATGGTGGCGTGACCGGGGTCGGCGAGCATGGCGAGGCGGCCGTTCTTG
ATCTCCTTGGTGCGCAGCTCCTTGATCTTCTCCGGCGAGCCGCTGCCCCAGCCGAGTGGGTCAAACCACAGGCCACCAGGGTACCTTAATTATTTTTTGC
ATTTCCAGCACACAGATGAATACATG