« Back to Corchorus capsularis search


Detailed information on CNT30727388


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282763Corchorus capsularisChenopodium quinoa20.558.4288.0667forward
CNT30197165Corchorus capsularisPisum sativum25.1526.4584.1582forward
CNT3044098Corchorus capsularisPrunus dulcis24.2315.1188.6179forward
CNT30651400Corchorus capsularisRosa chinensis24.5416.4987.580forward
CNT30619887Corchorus capsularisCajanus cajan23.3129.3490.7976forward
CNT30725037Corchorus capsularisLupinus angustifolius23.318.8790.7976forward
CNT3050430Corchorus capsularisCucumis sativus23.6221.6988.3177forward

Expression of CNT30727388

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGSNFTEVFVHHWSIYRIQTEPLRFLLIQASFPPHTKVHLLAN*

Sequence

>CNT30727388
GGCAATTAGTGTTGAACAAGTTAACATGAATAAAAATATTCATGGGATCTAATTTCACAGAGGTATTTGTACATCACTGGAGCATCTATAGAATACAAAC
AGAGCCATTAAGATTTCTACTGATACAAGCATCATTCCCTCCCCACACAAAAGTACATCTCCTTGCTAATTAGGCAAAGATATATAAATCATTCAATTCT
TGTTAAGGGTTTTCTCCTTGTTTGTGTCTCACTTGGGGGTGAACCACTTCCCCAGCCCAGTGGGTCGAACCAGAGCCCACCCGGGTACCCAACATCGGTC
CCAGTGAGCTTGTTGTCAGGGAAAAT