Detailed information on CNT3061339


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382472Arabidopsis lyrataManihot esculenta26.1426.239080forward
CNT3044357Arabidopsis lyrataPrunus dulcis30.0730.2686.9692forward
CNT30158975Arabidopsis lyrataPistacia vera27.1223.5185.5483reverse complement
CNT30479039Arabidopsis lyrataArabidopsis halleri98.6998.6991.06302forward
CNT30706625Arabidopsis lyrataPrunus avium507.9981.7153forward
CNT30120686Arabidopsis lyrataCitrus clementina36.2736.8885.59111reverse complement

Expression of CNT3061339

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LSSVTRACDSSEGKYVVGTLVRYKGSGSGWVFTDSPNPSQELCYVV*

Sequence

>CNT3061339
GCTGAGCTCAGTAACGAGAGCTTGTGACTCAAGTGAGGGCAAATATGTAGTTGGGACTTTGGTTCGGTACAAGGGGTCGGGTTCAGGCTGGGTTTTCACT
GACTCGCCCAATCCAAGCCAGGAGCTGTGCTACGTGGTTTGAGCGAAGGTTCGGATCTCGTGGCTCTTAAAGTGGAGGGTATTGCGTGAGGCTGGTTTCA
CAGAGCAGCGAATACCTCCCGCTTCCGGCAGTGTATGGTTAACGAGTCGGATCCGCTTGGGCCCAATATGATTTCATGGGCCGATCTCAATTGGACCAAT
TATTTT