Detailed information on CNT30506943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727290Nicotiana attenuataCorchorus capsularis49.1849.1882.67150forward
CNT30382472Nicotiana attenuataManihot esculenta31.831.885.5797forward
CNT3045640Nicotiana attenuataPrunus dulcis28.5228.2589.6687forward
CNT30714740Nicotiana attenuataMalus domestica golden22.6222.491.369forward
CNT30706625Nicotiana attenuataPrunus avium31.485.0286.4696forward
CNT30120686Nicotiana attenuataCitrus clementina30.4930.987.193reverse complement

Expression of CNT30506943

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MWWNIGPVQMAGFGWLISGLPYPSSELGHVAQTKVWARLAPKVEWTA*

>peptide 2 (48 aa)
MWPKRRYGPAWLLKWSGPREAGFTEQRIAPALCSGRITGRCHLSPINA*

>peptide 3 (55 aa)
PSSVTWACNPSGGINVVEYWACSDGRVWVANFWPALSKLRVGSCGPNEGMGPLGS*

Sequence

>CNT30506943
GCCGAGCTCAGTAACGTGGGCTTGTAACCCAAGTGGGGGCATTAATGTGGTGGAATATTGGGCCTGTTCAGATGGCAGGGTTTGGGTGGCTAATTTCTGG
CCTGCCCTATCCAAGCTCAGAGTTGGGTCATGTGGCCCAAACGAAGGTATGGGCCCGCTTGGCTCCTAAAGTGGAGTGGACCGCGTGAGGCTGGTTTCAC
AGAACAACGAATAGCTCCCGCTCTGTGCAGTGGAAGGATAACGGGTCGATGTCATCTAAGCCCAATAAATGCCTGATGGGCTGCTCTAATTAAACCACCA
CTTTT