Detailed information on CNT30116792


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189384Oryza nivaraSecale cereale22.5518.4589.66145forward
CNT30471290Oryza nivaraSaccharum spontaneum23.1716.5994.63149forward
CNT30686584Oryza nivaraTriticum urartu12.9135.9389.1683forward
CNT30367696Oryza nivaraSorghum bicolor23.1717.3393.96149forward
CNT30597163Oryza nivaraOryza meridionalis83.9890.9199.26540forward
CNT30101941Oryza nivaraOryza rufipogon84.4565.0395.4543forward
CNT30496713Oryza nivaraDigitaria exilis22.719.6994.52146forward
CNT30113329Oryza nivaraFicus carica20.3712.1687.02131forward

Expression of CNT30116792

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAAGGRLRITMLSSEETKHHNGTEQKLPKGSF*

>peptide 2 (37 aa)
QQTCCMLNFKRHKGHFQLQQTHELSTHRSPGNHIGIE*

>peptide 3 (37 aa)
MMIMPATISVNDDLPASETSITMRSANDEATRWVKMED

Sequence

>CNT30116792
ACCAACAAACATGTTGCATGCTCAACTTCAAAAGGCACAAAGGTCACTTCCAGCTTCAGCAAACACATGAACTGAGCACTCACAGATCACCAGGGAACCA
TATAGGGATAGAATAACCAAAACATAGGAGGTTTCATTTCTTCTTCTCAAAGTAGTGTAGCATCTTTCCTTCTTTCACCATTACATAAGCTTAAGCAATA
ACAGATAACAAATCCTCCTCCTCCTCCTCTAGGTAAAATATTCAAACACAATACCCTTATAAGTACTTATTATTAGGAAAGTAGCGTGCATGGGCATAAA
TGGCAGCGGGGGGCAGGTTAAGAATCACAATGCTGAGCAGCGAGGAAACAAAACACCATAATGGGACAGAGCAAAAGCTTCCGAAAGGGAGCTTTTAGGC
AGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCTGGGTCGTCCCTTCCGAAGTGACCGTAAGCCGCCGTCTTGAGGTAGCGTCCG
TTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGCCACCATAAGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGT
CCGCCAATGACGAAGCGACCAGATGGGTTAAGATGGAAGATTG