Detailed information on CNT30672532


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 3e-104

BLAST vs NONCODE:
NONPOPT000587, E-value = 7e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521184Setaria viridisSetaria italica62.0725.8499.66594forward
CNT30367696Setaria viridisSorghum bicolor62.869.8892.35601forward

Expression of CNT30672532

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 3 (36 aa)
MTKRPDGLRWKMVFSSSPTSADTKPMLRQVSLTIFS*

>peptide 4 (81 aa)
MRSTDDKATRWVKVEDGLLVKPDICRHETDVAASVPDNLLVVDVGLGGDLTKDHDHVSLGAGLASNLAVGVLSKASIKHSI*

>peptide 5 (51 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETWSQSLSGCPSFTDSEVKRKVW*

Sequence

>CNT30672532
CAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATA
AGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTC
CCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAG
TTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGG
AGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTC
CTTGCCGGAGAAAGCACCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCG
ATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCAAGTGTCCCTGACAA
TCTTCTCGTAGTCGACGTTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCGGGGTC
CTCAGCAAGGCAAGCATCAAGCACAGCATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCCCTCATTCACGGACTCCGAGGTGAAGAGGAAGGTATGG
TAACAAGTTGGGGAGTGCTCGTCTCAGATCCGACCCGGCCGCAGCGCACGCCGAGCT