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Detailed information on CNT30578282


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587325Oryza barthiiMusa acuminata18.7829.7880.68176forward
CNT30365453Oryza barthiiSorghum bicolor19.4268.6884.07182forward

Expression of CNT30578282

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MHTSPSPEPEKTRQLDLDAAVGGGLELEAIGAGVAVAAGDPAADLPPDAAVDLDLEDEVLRRDVLGEGVAEVGREGDVRAGEHRRPDVDVAVALVHRR

>peptide 2 (86 aa)
EKKIILSLCRCLNTWRDASTMKKNTLHSWIDRALSIVSANKFVGEVSWDLQVQLRERLITNCLVVHNIWDLQVQSKTYLTSPNPIL*

>peptide 3 (48 aa)
MCVLVVATELAIQQNSKKSVDPLNSYSSKSTCNLPKSPRIPPKKSGLG*

Sequence

>CNT30578282
GAAAAAAAAATCATTTTATCTCTTTGTAGATGCTTGAACACATGGAGAGATGCCAGTACAATGAAGAAAAATACTCTACATTCTTGGATAGATAGAGCAC
TCTCCATAGTCTCTGCTAATAAATTTGTTGGAGAAGTTTCTTGGGATCTCCAAGTTCAGTTAAGAGAGAGACTAATCACCAACTGCTTAGTAGTCCACAA
CATCTGGGATCTCCAGGTCCAATCTAAAACGTACTTAACTTCACCAAATCCTATACTTTGATGTGTGTTCTGGTTGTTGCCACCGAACTTGCAATCCAAC
AAAATTCCAAAAAATCAGTTGATCCCCTGAACTCGTATTCTTCAAAATCGACTTGCAACCTACCAAAAAGTCCTCGAATTCCCCCCAAAAAATCCGGACT
TGGATAGAACTCACTCAATCCACAAAACAACACGGATTGGATTGAAGCTAAGTGACAAACACAGAGATCTCCAAAAAAGAAGAGTTCCTTTTTTTTTAAC
CATAGTTATAATATCCTTTTATTAACAATTAAACGTGGAACTGAAAGCTTAACAACGCTTAAACACAAAATATACTTTGATTAACCCACGCTAAATTTAC
CTCTATACCCCCCACCTCAACGCTACAGTAATTACCGACATTTATGCACACCTCGCCGTCGCCGGAGCCGGAGAAGACGAGACAGCTAGACCTCGACGCG
GCAGTAGGTGGCGGTCTGGAACTTGAGGCCATTGGCGCCGGGGTAGCCGTTGCCGCCGGAGATCCAGCTGCCGACCTTCCACCGGACGCGGCCGTCGATC
TTGACCTGGAGGATGAGGTACTCCGCCGCGACGTCCTTGGCGAGGGCGTCGCCGAGGTAGGGCGCGAAGGGGACGTCCGGGCCGGAGAGCACCGGCGACC
AGACGTCGACGTCGCCGTGGCCCTGGTACACCGGCGG