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Detailed information on CNT30538066


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 1e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523916Brassica napusSetaria italica29.9824.5481.37161forward
CNT30514102Brassica napusJuglans regia26.0715.781.43140forward
CNT30378440Brassica napusArabidopsis thaliana28.4952.5892.16153forward
CNT30727458Brassica napusCorchorus capsularis37.0630.8582.41199forward
CNT30382125Brassica napusManihot esculenta17.1324.1588.0492forward
CNT3084502Brassica napusVigna radiata20.869.6782.14112forward
CNT30173073Brassica napusTrifolium pratense26.0730.0480.71140forward
CNT30260882Brassica napusBrassica rapa42.6435.2397.82229forward
CNT3017375Brassica napusZea mays29.4217.9781.65158forward
CNT30571520Brassica napusVitis vinifera24.9523.4785.82134forward
CNT3036031Brassica napusCucumis melo26.4423.5983.1142forward
CNT30726206Brassica napusLupinus angustifolius22.1611.6284.03119forward

Expression of CNT30538066

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFDEYDPDAFEKTLVAASLISTPSVAACSMACFLT*

>peptide 2 (43 aa)
ESRFWNVTSAVIRAISKTCFFSAIPAPGASLSNANDLRLKYMS*

>peptide 3 (51 aa)
RIQVLERDFCSHKSHLKDLLLLSHPCSRSIAVKRKRLAAQVHVLKLFLIVP*

>peptide 4 (87 aa)
MFPHVVHLNWLNPVHSPKTISNRSSPNHPKNLSKRLTIRLDIISPPKHERDRLRILPFVLKLLPLHQPVHNNLGARHRRRRGNSLRVQ

Sequence

>CNT30538066
AAGAATCCAGGTTCTGGAACGTGACTTCTGCAGTCATAAGAGCCATCTCAAAGACCTGCTTCTTCTCAGCCATCCCTGCTCCAGGAGCATCGCTGTCAAA
CGCAAACGACTTGCGGCTCAAGTACATGTCCTGAAGCTGTTTCTCATCGTTCCATGAAGAGTTCTCAACAGCGAGACTGATGTTTGACGAGTATGATCCC
GACGCGTTTGAGAAAACTCTTGTCGCTGCCTCTCTGATATCAACGCCAAGCGTTGCTGCTTGTTCCATGGCATGTTTCCTCACGTAGTTCATCTCAACTG
GCTCAACCCGGTTCACTCTCCCAAGACCATCAGCAACCGGTCTAGCCCCAATCATCCAAAGAACCTGTCCAAGAGACTCACCATACGTCTTGATATTATC
AGTCCCCCAAAGCACGAGCGCGATCGTCTCCGGATACTTCCCTTCGTTCTCAAGCTTCTGCCTCTCCACCAGCCTGTCCACAACAATCTTGGCGCTCGCC
ATCGCCGCCGTCGTGGGAATAGCCTGAGGGTCCAACG