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Detailed information on CNT30173073


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 5e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523916Trifolium pratenseSetaria italica26.8219.0581.6125forward
CNT30514102Trifolium pratenseJuglans regia70.823785.76330forward
CNT30378440Trifolium pratenseArabidopsis thaliana19.7431.6282.6192forward
CNT30727458Trifolium pratenseCorchorus capsularis61.5944.584.67287forward
CNT30382125Trifolium pratenseManihot esculenta55.7968.2481.15260forward
CNT3084502Trifolium pratenseVigna radiata73.8229.7188.66344forward
CNT30538066Trifolium pratenseBrassica napus30.0426.0780.71140forward
CNT30248696Trifolium pratenseAvena sativa33.4811.1780.13156forward
CNT30260882Trifolium pratenseBrassica rapa30.0421.5480.71140forward
CNT30681154Trifolium pratenseTriticum urartu26.8216.4782.4125forward
CNT30571440Trifolium pratenseVitis vinifera79.8386.7183.33372forward
CNT3036031Trifolium pratenseCucumis melo57.9444.8583.33270forward
CNT30551403Trifolium pratenseOryza brachyantha33.6927.7982.17157forward
CNT30726108Trifolium pratenseLupinus angustifolius50.2126.591.88234forward
CNT3064891Trifolium pratenseSelaginella moellendorffii14.8120.9785.5169forward

Expression of CNT30173073

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MKNFPQPGLCLRSKILTHWRRSLLRLLELQSLGFQLVQLHASLHSSVLLVRLIRQPSSLLYPEDSSG

>peptide 2 (40 aa)
MPAPGASESKAKDFLLRYMSWSCFSSFHEEFSTARFMFEE*

>peptide 3 (29 aa)
YLGISSGGISNICTWLLXXXXXXXSQSND*

Sequence

>CNT30173073
TACCTGGGCATTAGCAGTGGTGGTATCAGCAATATATGCACTTGGCTTCTTNNNNNNNNNNNNNNNNNNNTGAGTCAAAGTAATGACTGACATCAGTGAG
AGAGATTTCTGACGTGTCGAGGTTTTGGAATGTGGCGTCTGCTGTGCTGAGAGCCATCTGAAAGACTTGTCTTTTTTCACTCATGCCTGCACCAGGAGCA
TCAGAATCAAAAGCAAAAGACTTTCTGCTAAGGTACATGTCTTGGAGCTGCTTCTCATCATTCCATGAAGAATTTTCCACAGCCAGGTTTATGTTTGAGG
AGTAAGATCCTGACGCATTGGAGAAGATCCTTGTTGCGGCTTCTCGAACTTCAATCCCTAGGGTTTCAGCTTGTTCAATTGCATGCTTCCTTACATAGTT
CAGTTCTGCTGGTTCGTCTAATTCGGCAACCATCTTCACTGCTCTATCCAGAAGATTCATCTGGAG