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Detailed information on CNT30727458


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 3e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523916Corchorus capsularisSetaria italica20.7820.4380.6134forward
CNT30514102Corchorus capsularisJuglans regia60.4743.7286.15390forward
CNT30378440Corchorus capsularisArabidopsis thaliana12.427.4988.7580forward
CNT30382125Corchorus capsularisManihot esculenta37.0562.7380.75239forward
CNT30712554Corchorus capsularisGlycine max32.2556.6886.06208forward
CNT3084502Corchorus capsularisVigna radiata37.8321.0786.89244forward
CNT30538066Corchorus capsularisBrassica napus30.8537.0682.41199forward
CNT30173073Corchorus capsularisTrifolium pratense44.561.5984.67287forward
CNT30260882Corchorus capsularisBrassica rapa20.7820.6285.82134forward
CNT30619939Corchorus capsularisCajanus cajan32.424.8287.56209forward
CNT30571440Corchorus capsularisVitis vinifera51.9478.0985.97335forward
CNT3031792Corchorus capsularisTheobroma cacao35.1956.3393.83227forward
CNT3036031Corchorus capsularisCucumis melo27.7529.7382.12179forward
CNT30726206Corchorus capsularisLupinus angustifolius39.2224.7185.77253forward

Expression of CNT30727458

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHASSHSFVQVSENSRAINNNINPGPAKLFKTNWFHPVDST*

>peptide 2 (40 aa)
MPAPGASESKANDLRLKYISWSCFSSFHEEFSTARLTLEE*

>peptide 3 (54 aa)
MLPHIVLFKSLKTPEQLTTTSILGLPSSSRLTGSTLLTLPNVSATGFTPIIHKT*

Sequence

>CNT30727458
CTGCAATGTATGCACTAGGCTTCTTTCCATCCTTCCGTAGGTTCTGTACTAGATTTGTTGGATCAGAGTCAAAGTAATGACTCACATCAGTGAGTGAAAT
TTCTGATGAATCAAGATTTTGGAATGTGGCATCTGCAGTGCTGAGAGCCATCTCAAAGACTTTCCTTTTCTCAGTCATGCCTGCACCAGGGGCATCGGAG
TCAAAAGCAAATGATTTGCGGCTCAAGTACATATCTTGGAGCTGCTTCTCATCATTCCATGAGGAGTTCTCAACAGCAAGGTTGACATTGGAGGAGTAGG
ATCCAGAGGCATTGGAGAAGACTCGTGTTGCTGCTTCTCTGACGTCAATCCCCAACTCTTTGGCTTGCTCTAATGCATGCTTCCTCACATAGTTTTGTTC
AAGTCTCTGAAAACTCCAGAGCAATTAACAACAACATCAATCCTGGGCCTGCCAAGCTCTTCAAGACTAACTGGTTCCACCCTGTTGACTCTACCTAATG
TATCAGCCACTGGATTTACTCCAATCATCCACAAGACCTGAGCCAGTGACTCACCATAAGTTTTAATATTATCTGTTCCCCATAACACTAGTGCAACGGT
CTCTGGATACTTTCCCCCATTATCAATCTTCTGTCTTTCAATTAA