Detailed information on CNT30712554


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514102Glycine maxJuglans regia67.5727.889.11248forward
CNT30377826Glycine maxArabidopsis thaliana12.8120.2689.3647forward
CNT30727458Glycine maxCorchorus capsularis56.6832.2586.06208forward
CNT30248818Glycine maxAvena sativa30.7916.7283.19113forward
CNT30619939Glycine maxCajanus cajan76.8433.4995.74282forward
CNT3031792Glycine maxTheobroma cacao76.5769.7385.77281forward
CNT3036031Glycine maxCucumis melo47.4128.987.36174forward
CNT30575876Glycine maxOryza barthii43.3225.0483.02159forward

Expression of CNT30712554

Peptides detected in this lncRNA

>peptide 1 (41 aa)
PEQLTTTSILGLPSSSRLTGSTRFTLPKVSATGSTPIIHNT*

Sequence

>CNT30712554
CTCCTGAGCAATTAACAACTACATCAATCCTAGGCCTTCCAAGCTCTTCAAGACTTACAGGTTCCACCCGGTTTACCCTACCAAAGGTATCAGCCACTGG
TTCCACACCAATCATCCACAACACTTGAGCCAGGGATTCACCATATGTTTTAATATTATCAGTACCCCACAATACAAGTGCAATTGTCTCAGGATATTTT
CCCCCATTCTCAGCTTTCTGCCTCTCAATCAACCTATCTACCACTATTTTGGCACTCTGCATCGCTGCAGTTGTAGGAATAGCTTGCCCTGGCTCCACAT
ATTTACCTTCCAAGGCTTGTTTTAAACTTCCCACTTCATTATCAGCCACAACCAACTTCAAACATTC