Detailed information on CNT30571520


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523916Vitis viniferaSetaria italica25.3922.182.76145forward
CNT30378440Vitis viniferaArabidopsis thaliana15.5930.5886.5289forward
CNT30382125Vitis viniferaManihot esculenta45.5368.2485.77260forward
CNT30708612Vitis viniferaGlycine max14.0130.8987.580forward
CNT30538066Vitis viniferaBrassica napus23.4724.9585.82134forward
CNT30260882Vitis viniferaBrassica rapa28.7225.2384.15164forward
CNT3017375Vitis viniferaZea mays25.3916.582.07145forward
CNT3036031Vitis viniferaCucumis melo48.1645.6882.91275forward
CNT30551403Vitis viniferaOryza brachyantha50.6151.1580.97289forward
CNT30726108Vitis viniferaLupinus angustifolius36.7823.7884.29210forward

Expression of CNT30571520

Peptides detected in this lncRNA

>peptide 1 (37 aa)
ENELNQRGKLENKFIFQIFVEVTSIHPTKQQERAQVN*

>peptide 2 (69 aa)
MFPSFGMWHQLCLEPSQRPSSSQSCLHQGRHSQMRRTSGSSTCLAAASHHSMRNSQQQDLYWMSMSLMH*

>peptide 3 (61 aa)
MPAPGASQSNAKDFRLKYMSCSCFSSFHEEFSTARFILDEYEPDALEKTRVAASRTSMPRA*

Sequence

>CNT30571520
CTGAAAACGAATTAAATCAAAGAGGTAAACTGGAAAACAAATTCATATTCCAAATATTTGTGGAAGTTACATCTATCCATCCTACAAAGCAACAAGAAAG
AGCTCAAGTAAATTGATGTAGTTATTTGCACTCGATTTTCTCTATAACAGTTGGTTCATAATTTACCGATCAATTCCTTCAATCTTGTCCTCAACTTCTG
AGTACAACTGCCTCAACTTTTCGATATTATCTTCTGATGTTTCCCAGTTTTGGAATGTGGCATCAGCTGTGCTTAGAGCCATCTCAAAGACCTTCCTCTT
CTCAGTCATGCCTGCACCAGGGGCGTCACAGTCAAATGCGAAGGACTTCCGGCTCAAGTACATGTCTTGCAGCTGCTTCTCATCATTCCATGAGGAATTC
TCAACAGCAAGATTTATATTGGATGAGTATGAGCCTGATGCATTAGAGAAGACACGGGTTGCAGCGTCTCGAACCTCAATGCCAAGGGCTTGAGCTTGCT
CTAGTGCATGCTTCCTGACATAGTTCTGGTCTGCTGGCTCGTCTAGCTCAGCAACCATCTTCACTGCCCGG