Detailed information on CNT30579009


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30590300Echinochloa crusgalliMusa acuminata15.223592.8670forward
CNT30256030Echinochloa crusgalliAvena sativa20.6521.395.7995forward
CNT30447879Echinochloa crusgalliSaccharum spontaneum38.9134.7689.94179forward
CNT30348900Echinochloa crusgalliEragrostis tef30.6530.3995.04141forward

Expression of CNT30579009

Peptides detected in this lncRNA

>peptide 1 (32 aa)
AVTIPFVPNSPAPPPQAERPGARARAPPPPPR*

>peptide 2 (41 aa)
MRIIICCFVTDLCSSMRLLSPNILCSWLGIDCCFIKQLSSVF

>peptide 3 (75 aa)
PSPSRSSPTRQPRRRKQRDRELERELHPRRRDEGQVEEEENEEAQEEAPKDEAEVQVGVPGGRKGIVSCINCRAC*

>peptide 4 (56 aa)
RHHPVRPQLASPAAASRETGSSSASSTPAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30579009
GCCGTCACCATCCCGTTCGTCCCCAACTCGCCAGCCCCGCCGCCGCAAGCAGAGAGACCGGGAGCTCGAGCGCGAGCTCCACCCCCGCCGCCGCGATGAG
GGCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGGTCCAAGTAGGCGTGCCTGGAGGAAGGAAGGGAATCG
TCTCATGCATTAACTGCCGGGCTTGTTAGGATGATCCATCCTGATTTGCTTTTGGTGTAGATGTAGGAGCTGTGAACCTTCTTGGGTTCTAGTTTTATTT
ACTCTGGTCATGTTCTAAGGCTGGGTTTTATGTAATGAGGATAATCATATGTTGCTTTGTGACTGATTTATGCAGTTCAATGAGATTACTGTCTCCTAAT
ATACTGTGCTCGTGGTTGGGGATTGATTGTTGTTTCATAAAGCAGCTTTCTTCCGTTTTT