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Detailed information on CNT30331118


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 8e-97

BLAST vs NONCODE:
NONATHT001041, E-value = 5e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Dioscorea rotundataCorylus avellana34.8733.2885.78204forward
CNT30500934Dioscorea rotundataCoffea canephora31.6211.5382.7185forward
CNT3070976Dioscorea rotundataQuercus suber29.433.8683.72172forward
CNT30526271Dioscorea rotundataPhaseolus vulgaris32.3128.3883.6189forward
CNT30631012Dioscorea rotundataVigna unguiculata31.2814.4184.15183forward
CNT30505375Dioscorea rotundataNicotiana attenuata14.730.7191.8686forward
CNT30708353Dioscorea rotundataGlycine max34.725.6382.76203forward
CNT30238958Dioscorea rotundataBrassica oleracea28.3818.8284.34166forward
CNT30172108Dioscorea rotundataTrifolium pratense31.1116.9384.07182forward
CNT30313266Dioscorea rotundataCamelina sativa27.5226.7483.85161forward
CNT3077068Dioscorea rotundataBrassica juncea28.3816.3583.73166forward
CNT30264220Dioscorea rotundataBrassica rapa28.3820.684.34166forward
CNT30612591Dioscorea rotundataArabis alpina25.9819.0587.5152forward
CNT30119392Dioscorea rotundataCitrus clementina35.0422.3185.37205forward

Expression of CNT30331118

Peptides detected in this lncRNA

>peptide 1 (40 aa)
ERFTFRPFIFQEQSWWHRPMHCLPQGQRDDRTSSRSGPSR*

>peptide 2 (45 aa)
MENIASRPFLSSFTLSSANASGSSAKPNGSKPMSTTWLAQMARML*

>peptide 3 (76 aa)
KDLHLGLSFSRNKVGGIGPCIVCHRVSEMIVQVLDRALPGDNSLNEETEHGEHSQPAIFELLHLELGKCIGVIGQA*

Sequence

>CNT30331118
GAAAGATTTACATTTAGGCCTTTCATTTTCCAGGAACAAAGTTGGTGGCATAGGCCCATGCATTGTTTGCCACAGGGTCAGCGAGATGATCGTACAAGTT
CTCGATCGGGCCCTTCCCGGTGACAATAGCTTGAACGAAGAAACCGAACATGGAGAACATAGCCAGCCGGCCATTTTTGAGCTCCTTCACCTTGAGCTCG
GCAAATGCATCGGGGTCATCGGCCAAGCCTAATGGGTCGAAGCCCATGAGTACAACTTGGCTTGCCCAAATGGCAAGGATGCTTTGAGCATGAATCAAGT
TAGGGTTGCCCAAGTAGTCCAAACCACCTTCAGAGAAGATTTGTGAGCCTGCCTTGAACCAAACTGCTTCACCAAACTTGACTCCATTTTTTTCGACAAA
ATTTCGGGGAAGACACAACCCAATGCACCTAACATAGCCCATCTGCTGTGGATCACCTCCAATTCCCGATTCTTTGCGAAGGTCTCTGGGTCGGCGGAGA
GCCCAGCGGTATCCCAGCCATAGTCTCCGGGGAACTCTCCGGTGAGGTACGACGGAGTCTGTTCGGAGAATGGGCCCAAGTACTT