CANTATAdb - search

Detailed information on CNT30264220

BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 5e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3070976	Brassica rapa	Quercus suber	44.29	70.28	81.51	357	forward
CNT30124866	Brassica rapa	Physcomitrium patens	19.98	28.25	83.23	161	forward
CNT30510148	Brassica rapa	Solanum lycopersicum	13.03	24.76	84.76	105	forward
CNT30625449	Brassica rapa	Daucus carota	38.09	33.37	81.43	307	forward
CNT30480204	Brassica rapa	Arabidopsis halleri	43.18	96.13	89.37	348	forward
CNT30331118	Brassica rapa	Dioscorea rotundata	20.6	28.38	84.34	166	forward

Expression of CNT30264220

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MASRPFLSSFTFNSENASGSSAKFNGSNAPPG*

>peptide 2 (74 aa)
MLCAWIKLGFQGRRRDRRCPSRSLRGIHRLGTTVCSLRMDLSTWDGLVRTYVVYKIICLVISYVYISNSGIYKV*

>peptide 3 (75 aa)
MIKQVLNRTFTSNNSLDKESKHREHGKPTVLELLHFQLRERLWILGQVQRVKRPTRVKRVKTFTKGPTSDSVPFD*

Sequence

>CNT30264220
GAGATTTAAATATTTTCCATGCATTAAAAATTGAAGATAAAAAAAAATTACATGATTAATCCGATCAAATTCTATTTTCCGGGAACAAAGTTGGTGGCGT
AAGCCCAGGCATTGTTAGCCACAGGGTCCGCAACATGATCAAACAAGTTCTCAATCGGACCTTTACCAGTAACAATAGCTTGGACAAAGAATCCAAACAT
AGAGAACATGGCAAGCCGACCGTTCTTGAGCTCCTTCACTTTCAACTCCGAGAACGCCTCTGGATCCTCGGCCAAGTTCAACGGGTCAAACGCCCCACCC
GGGTAAAGCGGGTCAAGACCTTCACCAAGGGGCCCACCTCCGATTCTGTACCCTTCGATTAAACCCATTAGCACAACTTGAGATGCCCAAATAGCTAAAA
TGCTTTGCGCGTGGATCAAGTTAGGGTTTCAGGGTCGGCGGAGAGACCGGCGGTGTCCCAGCCGTAGTCTCCGGGGTATTCACCGGTTAGGTACGACGGT
GTGTTCTCTGAGAATGGACCTAAGTACTTGGGACGGTCTGGTCCGTACCTATGTTGTGTACAAAATTATATGTTTGGTGATTAGCTATGTATATATATCA
AATTCAGGAATATATAAAGTATAAACTAACCTCAATCGAATCTGAATATATTGTAGTTTTAAAGGAAAATTAAACAGATTAAAAAAATATCTTGAACCAC
GCAATACTTATAAAAAACTTTTTAATTATTTTTAATATTTATAACCAAAAACTTTTTCCAAAATATAAAAAAAAGTGAAAAATAGAGAGAAGATTGGTGT
AGGAAC