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Detailed information on CNT30172108


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 6e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30121647Trifolium pratensePhyscomitrium patens15.9122.8684.21171forward
CNT30145752Trifolium pratenseMedicago truncatula14.747.0292.41158forward
CNT30716010Trifolium pratenseMalus domestica golden19.7236.5582.55212forward
CNT30331118Trifolium pratenseDioscorea rotundata16.9331.1184.07182forward

Expression of CNT30172108

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MERTLIRIIKNLQVCNDCHVVTDTSQLSIRS*

>peptide 2 (44 aa)
MRYICFHHFKNGSCSCNNFCWHVADPCRATYRFCLCNYIGENRS*

>peptide 3 (35 aa)
MENIANRPFLSSFTFNSANASGSSARPRGSKAPPG*

>peptide 4 (63 aa)
MDHVLAITFAGMLRILVEPHTGSACVITLVKIEVKLNTNANESRRLQLKRQPYLGILIVRGRS*

>peptide 5 (52 aa)
MVRRAGPKLPALLMNSFPCLKPVLPVNADCWIAEVAMRALRFLAVVLFSVNS*

>peptide 6 (94 aa)
MHQGHQQDQEGQRHHQGKVDCKNALSMDQVWVAQIVKATLREDLGTSLKPDCLAEFNTILFKDFREGTSQCSKHSPSAVNYFKLTVLCKSFRVS*

>peptide 7 (64 aa)
MVVKVLNRSLAGNNGLNKETKHGEHSQSAVLEFLHLQLCKCIRVISKTKRVKGTTRVKWIARML*

Sequence

>CNT30172108
GAGAAGGAAAAATAAATTGAATTAGAGAACCGCAGTGAGAGTTGGCGATTTCATTTGGTCTCATCGATATGGAAAGAACTCTTATTCGCATTATAAAGAA
CCTTCAAGTCTGTAACGATTGCCATGTAGTTACCGACACCTCTCAGCTATCTATACGATCGTGAAATGAGGTACATCTGCTTTCATCATTTCAAAAATGG
ATCATGTTCTTGCAATAACTTTTGCTGGCATGTTGCGGATCCTTGTCGAGCCACATACAGGTTCTGCTTGTGTAATTACATTGGTGAAAATAGAAGTTAA
ACTCAACACAAATGCAAATGAGAGCAGAAGATTGCAGCTGAAGAGGCAGCCATATCTTGGCATTCTTATTGTCCGGGGACGAAGTTAGTAGCATATGCCC
ATGCGTTGTTGGCGACAGGGTCAGCAAGATGGTCGTAAAGGTTCTGAACAGGTCCCTTGCCGGTAACAATGGCTTGAACAAAGAAACCAAACATGGAGAA
CATAGCCAATCGGCCGTTCTTGAGTTCCTTCACCTTCAACTCTGCAAATGCATCAGGGTCATCAGCAAGACCAAGAGGGTCAAAGGCACCACCAGGGTAA
AGTGGATTGCAAGAATGCTTTGAGCATGGATCAAGTTTGGGTTGCCCAAATAGTCAAGGCCACCCTCAGAGAAGATCTGGGCACCAGCCTTAAACCAGAC
TGCCTCGCCGAATTTAACACCATTCTTTTCAAGGATTTCAGGGAAGGTACATCCCAATGCTCCAAGCATAGCCCATCTGCTGTGAATTACTTCAAGCTCA
CGGTTCTTTGCAAAAGTTTCAGGGTCAGCTGATAAGCCAGCTGTGTCCCATCCGTAGTCACCAGGGAATTCACCAGTCAGGAGCACTCTTCACAGTACGA
CGCATGGTGAGGCGAGCTGGGCCAAAGTTACCAGCTCTCCTGATGAACTCATTTCCTTGTCTCAAACCAGTCTTACCAGTGAATGCTGATTGTTGGATAG
CAGAGGTGGCCATGAGGGCTTTGAGGTTTCTTGCTGTTGTTCTCTTTAGTGTTAATAGCTAGCTAGTGTTGTTGT