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Detailed information on CNT30119392


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 9e-128

BLAST vs NONCODE:
NONSTUT002515, E-value = 6e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Citrus clementinaCorylus avellana35.0452.5383.54322forward
CNT30512563Citrus clementinaJuglans regia44.426.9886.03408forward
CNT30701193Citrus clementinaQuercus lobata45.733.3687.86420forward
CNT30374613Citrus clementinaArabidopsis thaliana37.1137.6480.35341forward
CNT3070976Citrus clementinaQuercus suber22.8541.3485.24210forward
CNT30378916Citrus clementinaManihot esculenta70.450.4382.07647forward
CNT30526271Citrus clementinaPhaseolus vulgaris18.6125.6889.47171forward
CNT30631092Citrus clementinaVigna unguiculata43.9635.7282.92404forward
CNT30711475Citrus clementinaGlycine max44.427.9881.13408forward
CNT30125041Citrus clementinaPhyscomitrium patens21.7635.2183200forward
CNT3085816Citrus clementinaVigna radiata40.8158.7882.4375forward
CNT30539463Citrus clementinaBrassica napus32.6441.5581.33300forward
CNT30238815Citrus clementinaBrassica oleracea36.6750.3781.01337forward
CNT30510148Citrus clementinaSolanum lycopersicum18.7240.5784.88172forward
CNT30172025Citrus clementinaTrifolium pratense63.8750.8780.92587forward
CNT30311416Citrus clementinaCamelina sativa45.1641.9282.41415forward
CNT3074635Citrus clementinaBrassica juncea45.1665.6680.48415forward
CNT30264606Citrus clementinaBrassica rapa32.4334.7781.21298forward
CNT30612591Citrus clementinaArabis alpina45.0551.8879.71414forward
CNT30605341Citrus clementinaGossypium raimondii44.8337.7688.11412forward
CNT30648173Citrus clementinaRosa chinensis70.8437.4881.72651forward
CNT30204126Citrus clementinaHelianthus annuus22.4240.2383.98206forward
CNT30716010Citrus clementinaMalus domestica golden20.5732.5985.19189forward
CNT30480205Citrus clementinaArabidopsis halleri42.8752.1980.71394forward
CNT30360562Citrus clementinaLactuca sativa44.0744.4681.23405forward
CNT30410959Citrus clementinaPapaver somniferum39.8341.1780.6366forward
CNT30326027Citrus clementinaAsparagus officinalis33.8454.6682.96311forward
CNT30331118Citrus clementinaDioscorea rotundata22.3135.0485.37205forward
CNT30112551Citrus clementinaFicus carica39.558.6484.3363forward
CNT30114814Citrus clementinaEutrema salsugineum45.1650.3680415forward

Expression of CNT30119392

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTEFSTKAHTIDRIMLQMKQTPSSHEFLHFPGTKLVA*

>peptide 2 (43 aa)
MSRGLLINQRYPSHSHQGTHQSSMMVFAQRMVPSTLGGLASKC*

>peptide 3 (56 aa)
MNEVGVAKIVKATFREDLSASLEPNCFAELHSILGEDFREDAAKSSKHCPSAVDHL*

Sequence

>CNT30119392
TGATGGAAATAAAAGATCAGGAGCATAGCATTTCTAATGGTAACATTACAGAGCTACTAGTAAGTCCATGACAGAGTTTTCCACAAAAGCACATACGATA
GATAGAATAATGTTACAGATGAAACAGACACCATCAAGTCATGAGTTTCTTCACTTTCCGGGAACAAAGTTAGTGGCATAAGCCCAGGCATTGTTGGCCA
CAGGATCAGCAATGTGGTCGTAGAGGTTCTCAATTGGACCCTTCCCAGTGACAATAGCCTGAACAAAGAATCCAAACATGGAGAACATAGCCAGACGGCC
ATTCTTGAGCTCCTTGACCTTCAACTCAGCAAATTGATCGGGGTCATCAGCCAAACCAAGGTAAAGTGGGTCAAGTCCTTCACCAAGAGGACCGCCACCA
ATTCTGTATCCTTCAACAAAACCCATGAGCACAACCTGGCAGGCCCAGATAGCCAAAATGCTCTGAGCATGAATGAGGTTGGGGTTGCCAAGATAGTCAA
GGCCACCTTCAGAGAAGATTTGAGCGCCAGCCTTGAACCAAACTGCTTCGCCGAACTTCACTCCATTCTTGGAGAGGATTTCAGGGAAGACGCAGCCAAG
AGCTCCAAGCATTGCCCATCTGCTGTGGATCACCTCTAGCTCACGGTTCTTAGCAAATGTCTCGGGGTCTGCTGATAAACCAGCGGTATCCCAGCCATAG
TCACCAGGGAACTCACCAGTCAAGTATGATGGTGTTTGCTCAGAGAATGGTCCCAAGTACTTTGGGCGGTCTGGCCAGCAAATGCTGATTGTTGGATAGC
AGAGGTTGCCATATGTTCTTATGCGAAAGCTTTTCCTTTTGTTGCTGAAGCTTCTTTTCGCACTCTGAATATGTTTAGGAGCTTAGTGTGAGATGGGTTA
TATCGGAAATGGGGAGATG