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Detailed information on CNT30606053


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315800Gossypium raimondiiCorylus avellana34.9345.8786.26211forward
CNT30516897Gossypium raimondiiJuglans regia57.4539.2586.74347forward
CNT30708121Gossypium raimondiiGlycine max35.632.3884.65215forward
CNT3087851Gossypium raimondiiVigna radiata59.9339.6185.36362forward
CNT30237809Gossypium raimondiiBrassica oleracea54.9759.8281.63332forward
CNT30311681Gossypium raimondiiCamelina sativa30.6325.7788.65185forward
CNT30625385Gossypium raimondiiDaucus carota59.635.7579.17360forward
CNT30620207Gossypium raimondiiCajanus cajan56.4615.8785.92341forward
CNT30573925Gossypium raimondiiVitis vinifera60.7644.8782.56367forward
CNT30642003Gossypium raimondiiCannabis sativa62.9155.7281.05380forward

Expression of CNT30606053

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MKDCSQEMMGCNQGMTWERMPSRQHKVRTEHPKWERDGDLGSASNLETSCLHDMEFLILEIEQVSCQIPDLPCN*

>peptide 2 (35 aa)
VMLDCKDWKETTLDCLVSMLEMDCTWLIADCNLER*

Sequence

>CNT30606053
GGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTGCTTGGTGAGTATGCTAGAGATGGACTGTACTTGGCTGATTGCGGATTGTAACTTG
GAGAGGTAGGGCTATAGCTAGGTGACGTGGGACCGTAACTTGGTGAGGTTGGAGAATAAGAGGGACTTGTAGGAGAGTAGGCTGGACTTGTTGGGCTGTA
ACCTGGTGAACTAGGACTGTAAGTAGGTGATGTGGGGCTGTAACCAGGCGAGGTAGGACTGTAGCCAGGAGATGAAGGACTGTAGCCAGGAGATGATGGG
CTGTAACCAGGGGATGACGTGGGAGAGAATGCCATCCCGCCAACATAAGGTGAGAACTGAGCATCCGAAATGGGAGAGAGACGGAGATTTGGGCTCAGCA
AGTAACTTGGAGACATCATGCCTTCATGATATGGAGTTCCTGATACTGGAGATCGAGCAGGTGTCATGCCAAATTCCAGACCTTCCATGTAACTAGGTAG
CTGAAGTTCAATGGCATTCTTCAACATCTCATCATTGAGATACAAGGCACACTCTCCTGTACCAATTGGTGCAAGCTGACCCAGCATTATATTCTCTGTC
ACAC