Detailed information on CNT30554580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316008Oryza glaberrimaCorylus avellana4546.7982.03306forward
CNT30500730Oryza glaberrimaCoffea canephora36.9129.0581.27251forward
CNT30616460Oryza glaberrimaSesamum indicum56.3226.6980.94383forward
CNT30269263Oryza glaberrimaChenopodium quinoa62.9456.1780.61428forward
CNT30524942Oryza glaberrimaPhaseolus vulgaris37.7938.380.54257forward
CNT30195835Oryza glaberrimaPisum sativum29.4178.7482200forward
CNT30490956Oryza glaberrimaOlea europaea33.8254.7682.61230forward
CNT30506120Oryza glaberrimaNicotiana attenuata58.5368.0380.9398forward
CNT30710435Oryza glaberrimaGlycine max29.8535.1884.24203forward
CNT30304911Oryza glaberrimaTriticum aestivum63.0971.7486.25429forward
CNT30400472Oryza glaberrimaTriticum turgidum63.0943.0385.08429forward
CNT30592011Oryza glaberrimaMusa acuminata26.3244.284.36179forward
CNT30145737Oryza glaberrimaMedicago truncatula41.3245.6281.85281forward
CNT30256655Oryza glaberrimaAvena sativa59.8590.6586.49407forward
CNT30311681Oryza glaberrimaCamelina sativa43.0940.8182.59293forward
CNT30468704Oryza glaberrimaSaccharum spontaneum67.2137.0985.12457forward
CNT30141877Oryza glaberrimaLolium perenne62.3594.6486.32424forward
CNT3017147Oryza glaberrimaZea mays90.1585.7380.75613forward
CNT30205386Oryza glaberrimaHelianthus annuus42.2140.1480.14287forward
CNT30341749Oryza glaberrimaEragrostis tef49.2675.2888.36335forward
CNT30620243Oryza glaberrimaCajanus cajan30.7462.9581.82209forward
CNT30596736Oryza glaberrimaOryza meridionalis99.7189.898.08678forward
CNT30577473Oryza glaberrimaOryza barthii49.5661.8399.7337forward
CNT30176441Oryza glaberrimaVigna angularis51.0357.3678.96347forward
CNT30558075Oryza glaberrimaPanicum hallii78.0967.383.43531forward
CNT30335475Oryza glaberrimaCynara cardunculus43.0922.5681.57293forward
CNT3049544Oryza glaberrimaCucumis sativus43.5336.9581.42296forward

Expression of CNT30554580

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MQEMSDCMRVMSDCMRGKWGCKTEMLDCMMEMLGYMMVMWGCKMVMWGYKMVMWGCMQEKLDYMQEKSDYKLVMSGCNLEM*

>peptide 2 (55 aa)
NLVKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 3 (37 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHP*

Sequence

>CNT30554580
GTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGT
GAAGTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATG
AGGGTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGATGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCT
GTAAGATGGTGATGTGGGGCTATAAGATGGTGATGTGGGGCTGTATGCAGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTC
GGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGATGGACTGGTAGGCGAGTATGACGGAC
TGGTAGGTGAGTATGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGA
TGGAGAAGTTGGGCTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCTGACGATGGAGTGTA