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Detailed information on CNT30387477


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520631Triticum turgidumSetaria italica43.6515.8691.19227forward
CNT30290500Triticum turgidumTriticum aestivum89.8190.597.86467forward
CNT30244633Triticum turgidumAvena sativa45.7743.9994.12238forward
CNT30229721Triticum turgidumAnanas comosus38.278.4887.94199forward
CNT30147934Triticum turgidumBrachypodium distachyon24.8133.8689.92129forward

Expression of CNT30387477

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVVCSGSLRKATMARRACLISASCRVSFFTGSAASPSGSK*

Sequence

>CNT30387477
TATTTTTGTAATCGCAAAAACGAAACAAAAGATTAGCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCACCAA
GTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGT
TCGTACACTGACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAAGATGGTGGT
GTGCAGCGGGTCGCTGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTCACCGGGTCCGCCGCGAGTCCC
AGCGGGTCGAAGTAGGAGCCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCC
AGATCAACGTGGTGAGCGTG