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Detailed information on CNT30268359


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43832|RBS2_SPIOL, E-value = 4e-51

BLAST vs NONCODE:
NONCQUT001608, E-value = 7e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30508072Chenopodium quinoaNicotiana attenuata30.9220.9484.92179forward
CNT30166270Chenopodium quinoaPistacia vera35.2331.3487.25204forward
CNT30545373Chenopodium quinoaBrassica napus30.7429.1882.02178forward
CNT30235546Chenopodium quinoaBrassica oleracea32.322.5381.28187forward
CNT30146878Chenopodium quinoaMedicago truncatula33.6816.0181.03195forward
CNT30310235Chenopodium quinoaCamelina sativa32.4722.0781.91188forward
CNT3074948Chenopodium quinoaBrassica juncea31.7826.4782.07184forward
CNT30261239Chenopodium quinoaBrassica rapa31.7823.2981.52184forward
CNT30605276Chenopodium quinoaGossypium raimondii33.1648.6183.85192forward
CNT30648517Chenopodium quinoaRosa chinensis35.234086.27204forward
CNT30371468Chenopodium quinoaOryza glumipatula35.4117.8184.88205forward
CNT30422416Chenopodium quinoaPapaver somniferum32.8225.9683.16190forward
CNT30705707Chenopodium quinoaPrunus avium32.1216.587.1186forward
CNT3039544Chenopodium quinoaMarchantia polymorpha10.3622.5693.3360forward

Expression of CNT30268359

Peptides detected in this lncRNA

>peptide 1 (31 aa)
EERISLQVHYGIQEIRTKIAKKSQIYGAHNN*

>peptide 2 (39 aa)
KREFLSKYIMEFKKSEQKLQKNLKYTEHIIISILRACRQ*

Sequence

>CNT30268359
TGAAGAGAGAATTTCTCTCCAAGTACATTATGGAATTCAAGAAATCAGAACAAAAATTGCAAAAAAATCTCAAATATACGGAGCACATAATAATTAGTAT
CCTTCGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGGAAGCTGTCGAATCCAATGATACGGATGAAGGCGTTGGGGTAAGCCTTCTTGGCTT
CCTCGAGCTCGTTGACCACTTGAGTAGGGTCAGTGCAACCGAACATGGGCAACTTCCACATGGTCCAGTAACGGCCATCATAGTATCCTGGGGACCTGTG
GTTCTCACGGAACCCATCCCTTGTTAAGAAGGTATTGGACTTCACTAAGCAAAGACTCAGTGGTCAAAGGTGGAAGGTAAGATAGGGTCTCGAACTTCTT
CTTGCCAACTGGGAAGGCAACGGTTGACTTCAAGCCATTGAAAGGAGCCACCATGCTAGCTTGAGCCGGAGTTCGGTTAACGGCGGCGACAGTGGTGGAG
GAGATGACGGAGGAAGCCATTTTAATTTTGTAACACTTAAATCACTCCTCTTTACTTGATACTATTACAACTCTTTTTC