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Detailed information on CNT30545373


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Brassica napusEucalyptus grandis29.1835.683.71178forward
CNT30268359Brassica napusChenopodium quinoa29.1830.7482.02178forward
CNT30727202Brassica napusCorchorus capsularis31.3111.0383.25191forward
CNT30525466Brassica napusPhaseolus vulgaris12.9526.687.3479forward
CNT30712572Brassica napusGlycine max32.4630.2380.81198forward
CNT30235483Brassica napusBrassica oleracea62.9568.2198.18384forward
CNT3074857Brassica napusBrassica juncea62.6256.9399.74382forward
CNT30261239Brassica napusBrassica rapa56.7243.891.04346forward
CNT30605276Brassica napusGossypium raimondii29.1845.0683.15178forward
CNT30648517Brassica napusRosa chinensis27.8733.3384.12170forward
CNT30573704Brassica napusVitis vinifera26.892181.71164forward
CNT30705707Brassica napusPrunus avium26.8914.5581.71164forward
CNT3038903Brassica napusCucumis melo33.1126.6880.2202forward
CNT30115242Brassica napusEutrema salsugineum39.3447.988.75240forward
CNT3039544Brassica napusMarchantia polymorpha11.827.0787.572forward

Expression of CNT30545373

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFTITHLTIRYRMSEKQKTKGKRNRQLEMK*

Sequence

>CNT30545373
AGTTGAAAACCTAATAGCCATCGGAAAGTAACCAAGACGAAGAAGCAATATAGAGATTACATGTTCACAATCACACATTTGACAATCCGATATAGAATGT
CTGAGAAACAGAAAACCAAAGGGAAAAGAAACAGACAATTGGAAATGAAATGAGCAGAGATTATTATGTGAATGTCATAGCAAATTAAGCACCGGTGAAG
CTTGGTGGCTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTGATGAAAGCGTTAGGGTACTCCGTTTTGCATT
CTTGGACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGCTTCCACATTGTCCAGTAACGGCCATCGTAGTCAACTTCCTTACCCAA
TTCAACTTCGGTAAGGTCAGGAAGTAATGTCGTTGTTTGCTTTGCGGGTGACTGGGAATGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGT
GGCTTGAGCCGGGGAGGTAACCACAGCAGCGGAGGAAAGCATAGAGGAAGCCATTACTACTTCTTCTTCTTCTTCTTTTCTCTTAACTTACTTGTTTGTC
TATCGCTTTG