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Detailed information on CNT30310235


BLAST search results

BLAST vs Swiss-Prot:
sp|P10795|RBS1A_ARATH, E-value = 6e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Camelina sativaEucalyptus grandis21.3636.486.26182forward
CNT30317063Camelina sativaCorylus avellana21.3631.4982.97182forward
CNT30514732Camelina sativaJuglans regia21.8320.9982.8186forward
CNT30268359Camelina sativaChenopodium quinoa22.0732.4781.91188forward
CNT3020258Camelina sativaCitrullus lanatus21.7126.281.62185forward
CNT30727187Camelina sativaCorchorus capsularis22.6524.6587.05193forward
CNT30166270Camelina sativaPistacia vera21.3627.9681.32182forward
CNT30605276Camelina sativaGossypium raimondii21.0145.3286.59179forward
CNT30648517Camelina sativaRosa chinensis19.4832.5586.75166forward
CNT30623489Camelina sativaDaucus carota20.5426.481.71175forward
CNT30705707Camelina sativaPrunus avium21.0115.8884.36179forward
CNT30319154Camelina sativaAsparagus officinalis21.362783.52182forward
CNT3038822Camelina sativaCucumis melo22.0742.2583.51188forward

Expression of CNT30310235

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MFTKKQSKGGEVWKLSIGEAWGLVGDETDALHLTGVVESDDPNEGFGVLLLALLDFLQHLSGVGATEQGKLPHCPVPSIVVSGGVTVLTVHKPVL*

>peptide 2 (71 aa)
MLQTNSEYFFKEFLAKLYTTTTTTTTRKYSPRSIFMFKLDYLQLEFNTGNPLVADKVVNFLSQFGFGKVRK*

Sequence

>CNT30310235
ATAGAACATTACATATTTATTTCATCAGACATTTGAGAATCCGATAGAAAATGTCTCGCAAACCGGAAAACAAACGTTAAATCCGGAAATTAAAACTTTA
GATATGTAAAAAAAAAAGAAGAAGAAAAGCAGAATGATATAAAATCAAAGGTGGGGGATAATGTTTTGATGTTTACAAAGAAACAAAGCAAAGGGGGAGA
GGTTTGGAAATTAAGCATTGGTGAAGCTTGGGGGCTTGTAGGCGATGAAACTGATGCACTGCACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAA
GGCTTCGGGGTACTCCTTCTTGCACTCCTCGACTTCCTTCAACACTTGAGCGGAGTCGGTGCAACCGAACAAGGGAAGCTTCCACATTGTCCAGTACCTT
CCATCGTAGTATCCGGGGGTGTTACCGTGCTCACGGTGCACAAACCCGTTCTATAAAAACCACACATGTTACAAACCAACTCAGAATATTTTTTTAAAGA
GTTCCTAGCGAAATTATACACAACAACAACAACAACAACAACAAGAAAATATAGTCCAAGATCTATATTTATGTTCAAACTTGATTACCTCCAACTCGAA
TTCAACACAGGGAATCCACTTGTTGCGGATAAGGTAGTCAACTTCCTTAGCCAATTCGGATTCGGTAAGGTCAGGAAGTAATGTCGTTGTTGGCCTTGCG
GGTGGCTGGGAAAGCAGCGGAGGACTTAAGTCCGGTGAAAGGAGCGACCATAGTGGCCTGAGCCGGAGAGGCAACCATAGTAGCGGAAGAGAGCATAGAT
GAAGCCATTGTTCTTCTTTACTCTTTTGTGTGACTGAGGATAGGTCTACTGC