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Detailed information on CNT30235546


BLAST search results

BLAST vs Swiss-Prot:
sp|P05346|RBS1_BRANA, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Brassica oleraceaCorylus avellana21.9331.4980.22182forward
CNT30512567Brassica oleraceaJuglans regia26.3952.3980.37219forward
CNT30378198Brassica oleraceaArabidopsis thaliana31.233.4289.96259forward
CNT30268359Brassica oleraceaChenopodium quinoa22.5332.381.28187forward
CNT30727189Brassica oleraceaCorchorus capsularis28.5529.0182.28237forward
CNT30525466Brassica oleraceaPhaseolus vulgaris9.426.2687.1878forward
CNT30710856Brassica oleraceaGlycine max27.8322.4980.52231forward
CNT30312471Brassica oleraceaCamelina sativa31.4534.8592.72261forward
CNT3062250Brassica oleraceaArabidopsis lyrata32.052592.11266forward
CNT3075084Brassica oleraceaBrassica juncea73.3770.1694.75609forward
CNT30261239Brassica oleraceaBrassica rapa69.2872.7894.09575forward
CNT30613234Brassica oleraceaArabis alpina27.8340.5391.77231forward
CNT30605276Brassica oleraceaGossypium raimondii21.5745.3283.8179forward
CNT30479552Brassica oleraceaArabidopsis halleri29.1642.1691.32242forward
CNT30355778Brassica oleraceaLactuca sativa21.3322.5283.05177forward
CNT30725197Brassica oleraceaLupinus angustifolius21.5725.3582.12179forward
CNT30115242Brassica oleraceaEutrema salsugineum22.1736.7390.76184forward
CNT3039544Brassica oleraceaMarchantia polymorpha9.5229.788.6179forward

Expression of CNT30235546

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFIKSDILQSDIESLVNRNPKRKKKETDLLEMK*

Sequence

>CNT30235546
TTTTGTAAAGTTATTATTCTGACTGTTTTCTTATCCCAATAAATTGAAAACCTAATAGCCATCTGAAAGTAGTAACCACGAAGAAGAAGCAGTATAGAAA
TTACATGTTCATAAAATCAGACATTTTACAATCCGATATAGAAAGTCTCGTAAACAGAAATCCAAAGAGAAAAAAAAAAGAAACAGACTTATTGGAAATG
AAATGAGAAGATATTATTATATGAAAGCGAATTAAGCACCGGTGAAGCTTGGTGGCTTGTACGCGATGAAACTGATGCACTGGACTTGACGGTTGTTGTC
GAATCCAATGATCCTGATGAAGGCATTAGGGTACTCAGTTTTGCATTCTTGAACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGC
TTCCACATTGTCCAGTAACGGCCATCGTAGTATCCGGGGGTGCTTCCGTGCTCACGGTACACAAATCCGTGCTACAAACACATGAGAATTCCATTTAAAA
TCAGGATTGAGATCATGTGATAAAAGATGTTTAGATCCAAAAAATATTTTGTCTTCATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCG
GAGAAGGTAGTCAACTTCCTTACCCAATTCAACTTCGGTAAGGTCAGGAAGGTAATGTCGTTGTTGGCCTTGCGGGTGACTGGGAATGCAGAGGAAGACT
TCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCCGGGGAGGTAACAACAGCGGCGGAGGAGAGCATAGAGTAAGCCATGACTACTTCTTCTTCCTT
CTCTTAACTCTTACTGTTAGTCTATTGCTT