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Detailed information on CNT30371468


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 6e-74

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672589Oryza glumipatulaSetaria viridis21.4630.9184.62247forward
CNT30521106Oryza glumipatulaSetaria italica21.4634.0784.62247forward
CNT30268359Oryza glumipatulaChenopodium quinoa17.8135.4184.88205forward
CNT30179714Oryza glumipatulaSecale cereale28.6737.7185.15330forward
CNT30288857Oryza glumipatulaTriticum aestivum22.152085.88255forward
CNT30221752Oryza glumipatulaHordeum vulgare21.8937.6786.11252forward
CNT30387693Oryza glumipatulaTriticum turgidum22.1524.0385.88255forward
CNT30436411Oryza glumipatulaAegilops tauschii21.8938.2485.71252forward
CNT30248284Oryza glumipatulaAvena sativa21.8933.5685.71252forward
CNT30659819Oryza glumipatulaTriticum dicoccoides22.1532.3685.88255forward
CNT30136970Oryza glumipatulaLolium perenne21.5538.8184.68248forward
CNT302730Oryza glumipatulaZea mays21.4639.0883.81247forward
CNT30648517Oryza glumipatulaRosa chinensis18.7742.3587.04216forward
CNT30685310Oryza glumipatulaTriticum urartu28.3238.4484.36326forward
CNT30720492Oryza glumipatulaTriticum spelta19.8145.3386.4228forward
CNT30351770Oryza glumipatulaEragrostis tef20.9424.6986.31241forward
CNT30150944Oryza glumipatulaBrachypodium distachyon21.2936.6887.76245forward
CNT30585439Oryza glumipatulaEchinochloa crusgalli20.6837.683.61238forward
CNT30604902Oryza glumipatulaOryza punctata11.0339.0892.13127forward
CNT30557030Oryza glumipatulaPanicum hallii26.7677.7884.42308forward
CNT30551876Oryza glumipatulaOryza brachyantha21.0328.1495.04242forward

Expression of CNT30371468

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 2 (73 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGSDGGGRRRHHGGGHLCSSPSSLLLCSSTS*

>peptide 3 (51 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWVVAVVASRPG

>peptide 4 (76 aa)
MHLILPPLLTLPKLELPERRAMGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

Sequence

>CNT30371468
CCGATGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATC
TCATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATACAGAGCACGGCCGGTAAAATCAA
AAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCGAATCAGAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTA
GTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCAATGATACGGACGAATGCA
TCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCAGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGT
CGTAGTATCCGGGGGACCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTC
GAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTAAGAAGAAGAAGAATGTGTGTTGGATC
AGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGATGGGCATGCCGGCGGTGGA
CTTGAGCCCCTGGAAGGGAGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTA
CTTCTTGAGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCAGCGGTCTCACCCTCCCTAGCTAGCTAATCGGATGGCAG
CGGCGCTCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGGCTGGCTCACGCGCGCGCGGTGG
TGTCGCGCCGGGCTCGTGGGTTGTGGCCGTGGTGGCATCTCGACCCGGGCT