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Detailed information on CNT30508072


BLAST search results

BLAST vs Swiss-Prot:
sp|P69250|RBS1_NICSY, E-value = 5e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Nicotiana attenuataEucalyptus grandis21.436.681.97183forward
CNT30268359Nicotiana attenuataChenopodium quinoa20.9430.9284.92179forward
CNT30712490Nicotiana attenuataGlycine max20.8231.5680.9178forward
CNT30633374Nicotiana attenuataCapsicum annuum23.2723.1989.95199forward
CNT30543822Nicotiana attenuataBrassica napus7.2521.3891.9462forward
CNT30508846Nicotiana attenuataSolanum lycopersicum21.438.4587.98183forward
CNT30313480Nicotiana attenuataCamelina sativa20.8229.2382.02178forward
CNT30605276Nicotiana attenuataGossypium raimondii21.6446.8482.7185forward
CNT30705707Nicotiana attenuataPrunus avium21.2916.1581.87182forward

Expression of CNT30508072

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEVMSRFCFLEIGKEEADLRPVKGATMLA*

>peptide 2 (86 aa)
MLLHLVKYTDSAEFFIVLSVYCKLNPYNIYYKLDLHALNSSTIASNGSNVKILFPGNREGGGGLEASEGCNHAGLSSIGAGRNSSC*

>peptide 3 (78 aa)
MEILKAFGLVGNETDALHLTDVVESNDSDPGLWVSLLCLLYLSQDLSGISAPEHGQLPHGPVSAIVEPIHFSKGTQLP*

Sequence

>CNT30508072
CAAATAATTATTATTAGTTCTCACAAACTTGATTGGAATTCAAAAACATACATTGAATAGAATGAAGGAGGGAAAACCAAAACAGTTTCTCCGGGGAAAA
ACATAAGGATAATATTCAACGAAACTTCCCCTAAAGACATAGGTTAAGTTGTCTCAAATATGGAGATATTAAAAGCCTTCGGGCTTGTAGGCAATGAAAC
TGATGCACTGCACTTGACGGACGTTGTCGAATCCAATGATTCTGATCCAGGCTTGTGGGTAAGCCTTCTTTGCCTCCTCTACCTCAGCCAAGACCTGAGT
GGCATCAGTGCACCCGAACATGGGCAACTTCCACATGGTCCAGTATCTGCCATCGTAGAACCCATCCATTTTTCAAAAGGTACTCAACTTCCCTAAGCAA
TTGCTCCTCGCTCAAATCAGGAAGGTATGAGAGTGTCTCGTACTTCTTCTTGTTAATTGGTGGCCACACCTACATATATCCCACATAAAAAATTTAAAGA
AGCTCCATAAATGTTACTCCACTTAGTGAAATATACTGATAGTGCAGAGTTCTTTATAGTACTATCAGTATATTGCAAGTTAAATCCATATAATATATAC
TACAAATTAGACCTGCATGCATTGAACTCTTCCACCATTGCTAGCAATGGAAGTAATGTCAAGATTTTGTTTCCTGGAAATAGGGAAGGAGGAGGCGGAC
TTGAGGCCAGTGAAGGGTGCAACCATGCTGGCTTGAGCAGCATTGGCGCCGGTCGCAACAGCAGCTGCTGAGGACATAACTGAGGAAGCCATTTCTGAGA
ACAATTTCTTGGCTTAAAGCTATTGCTACCTTTTACCTTTGCTTTCAGGAGGGTT