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Detailed information on CNT30261239


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 2e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Brassica rapaEucalyptus grandis21.7734.483.72172forward
CNT30377715Brassica rapaArabidopsis thaliana47.093586.02372forward
CNT30268359Brassica rapaChenopodium quinoa23.2931.7881.52184forward
CNT30727210Brassica rapaCorchorus capsularis30.139.2881.93238forward
CNT30712618Brassica rapaGlycine max24.332.8881.25192forward
CNT30166270Brassica rapaPistacia vera23.5428.5781.72186forward
CNT30545373Brassica rapaBrassica napus43.856.7291.04346forward
CNT30235546Brassica rapaBrassica oleracea71.5268.0793.98565forward
CNT30312471Brassica rapaCamelina sativa49.4952.288.24391forward
CNT3062250Brassica rapaArabidopsis lyrata46.8434.7787.3370forward
CNT3074958Brassica rapaBrassica juncea76.4669.4397.52604forward
CNT30613234Brassica rapaArabis alpina29.2440.5392.21231forward
CNT30605276Brassica rapaGossypium raimondii22.2844.5683.52176forward
CNT30648517Brassica rapaRosa chinensis22.6635.183.24179forward
CNT30479552Brassica rapaArabidopsis halleri30.2541.6491.21239forward
CNT30355778Brassica rapaLactuca sativa22.4122.5283.05177forward
CNT30573704Brassica rapaVitis vinifera22.6622.9281.56179forward
CNT30705707Brassica rapaPrunus avium22.2815.6281.25176forward
CNT30335392Brassica rapaCynara cardunculus2019.3981.65158forward
CNT30725197Brassica rapaLupinus angustifolius22.2824.9381.25176forward
CNT3039544Brassica rapaMarchantia polymorpha1029.788.6179forward

Expression of CNT30261239

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MFRSKKQNFCFYYLQLEFNTRNPLVAEKVVDFLTQFNFGKVRK*

Sequence

>CNT30261239
TAAAAATTGATAATAACCATCGGTAACCAAGAAGAAAATATGCAATATAGAGATTACATGTTCATAAATCAGACACTTGACAATCCGATATAACATGCCT
CAGAAACAAAAAGCCAAAGAAAACAGACAAATGGAAATGAAATGAGTAGATATTATTTATGAAATGTCTTACAACGCGAATTAAGCACCGGTGAAGCTTG
GTGGTTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTGATGAAAGCGTTAGGGTACTCCGTTTTGCATTCTTG
GACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGCTTCCACATTGTCCAGTAACGTCCATCGTAGTATCCGGGGGTGCTTCCGTGC
TCACGGTAAACAAACCCGTGCTACACACACGTGAGAATTCCAATCAAAATCAGGATTGAGATTATGTGATAAAAGATGTTTAGATCCAAAAAACAAAACT
TCTGTTTTTATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCGACTTCCTTACCCAATTCAACTTCGGTAAGGTCAG
GAAGTAATGTCGTTGTTTGCTTTGCGGGTGACTGGGAATGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCCGGGGAGGTAA
CCACAGCAGCGGAGGAAAGCATAGAGGAAGCCATTACTACTTCTTCTTCTTCTTCTTTTCTCTTAACTTACTTGTTTGTCTATCGCTTTG