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Detailed information on CNT30422416


BLAST search results

BLAST vs Swiss-Prot:
sp|Q04450|RBS2_MESCR, E-value = 4e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268359Papaver somniferumChenopodium quinoa25.9632.8283.16190forward
CNT30633374Papaver somniferumCapsicum annuum25.6821.9180.32188forward
CNT30146185Papaver somniferumMedicago truncatula23.2214.1381.76170forward
CNT30705707Papaver somniferumPrunus avium24.4515.8881.01179forward

Expression of CNT30422416

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQLTLPPLLEMEVMSADLWVTGNAETDFKPLKGATMVA*

Sequence

>CNT30422416
AGTTCCGGTAGATCAAAAAGAAGAAGACATTATTTAGGATAAGTTTCATTATAACAAACAGAATATTATCATACACATGATTAGACGATAGCGTTGTCAT
ACACTCAAATCCAATTAAAGATACGAATCATATGATTCAAAACTGAATTAAGGAAAAACAAAACAAAAAACACAGAAATGAACTAATCCATCAAAGGTTT
TCAGTAGCTAGTACTCTCGGGCTTGTATGCGATGAAACTAACACATTGTACTTGACGGACGTTGTCGAATCCGATGATTCTGATGAAAGAGTCTGGGTAA
GCAGCCTTGGCCTCCTCTAGCTCCTTGACAACCTGGGAAGCGTCGGTACAACCGAACATGGGCAATTTCCACATTGTCCAGTAACGACCATCATAGTATC
CAGGGGTGTTACCGTGTTCTCTGTACACGAATCCTCTGGCGTCGAATTCCAAACAGGGAACCCATCCATTACGGAGAAGGTATGAGAGGGTCTCAAACTT
CTTCAAACCAGTTGGTGGCCATACCTGCATGCAGTTAACTCTTCCTCCGTTGCTGGAGATGGAGGTGATGTCGGCTGATTTGTGGGTGACGGGGAATGCA
GAAACGGATTTCAAACCGCTGAAAGGTGCAACCATGGTAGCTTGAGTGGGAGCGGAGCTCCTTACGGAGGCGACTGCAGCAGAAGAAATCATTGAAGAAG
CCATTTTTTCTTTTCACTCTACTTCTTTCTTG