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Detailed information on CNT30350307


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30233367Eragrostis tefBrassica oleracea40.2934.6878.96309forward
CNT30583070Eragrostis tefEchinochloa crusgalli42.1128.8191.95323forward

Expression of CNT30350307

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNRDAVPQTLHHHQPTRTNPHTSRRSIAPTGSS*

>peptide 2 (35 aa)
MQCLKRFTIINQRARIHTHLVAQLHRQAAASNATG*

>peptide 3 (41 aa)
MKYPRMASMASLPFLISLSLSSLSDFSSLPNPSGLKIGPPG*

Sequence

>CNT30350307
AACTGCCTGGATAAACCCTGGCAAACTAAAGGTTATATGATACTGTACCTAGCTAGGTTTGATAACACGAAGTAATTGTTGGCAATGTTGAGGTAGTATC
ACGGTAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATTGCTATTTTGTTACAAGCAGCAGGCTGGCGA
TGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAACCAACGCGCACGAATCCACACACATCTCGTCGCTCAATTGCACCGACAGGCAGCA
GCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTAAAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACGGGGTCGGCGAGG
TGGTCGAGCAGGTTCTGGTAGGGTCCTTCGCCGGTGACAAGGCCCTGGATGAAGTACCCCAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCT
TGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGTAGGCCGGGTCGCCGGAGCCGCCGAGGAA
CTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGCAGCCGGCGGTGCCGGCGGGCGGGATGACGCCCGTCTTGAACC
ACGGCAGCGCTGTCTCCGCCGGGATCAGGCCCAGCTTGCCGAACACCTCCGGGGCGATGGAGCCCGC