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Detailed information on CNT30172978


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547369Trifolium pratenseIpomoea triloba24.189.9689.1974forward
CNT30617951Trifolium pratenseSesamum indicum22.557.2989.8669forward
CNT30379424Trifolium pratenseManihot esculenta27.4527.7288.184forward
CNT30403856Trifolium pratenseBeta vulgaris47.0646.7582.64144forward
CNT3048431Trifolium pratensePrunus dulcis22.5517.9789.8669forward
CNT30566737Trifolium pratenseActinidia chinensis21.5726.5189.3966reverse complement
CNT30591720Trifolium pratenseMusa acuminata24.5123.5190.6775forward
CNT30238127Trifolium pratenseBrassica oleracea23.223.2888.7371forward
CNT30143891Trifolium pratenseMedicago truncatula100100.6688.24306forward
CNT30260145Trifolium pratenseBrassica rapa22.5522.8586.9669forward
CNT30204138Trifolium pratenseHelianthus annuus23.5323.5388.8972forward
CNT30625980Trifolium pratenseDaucus carota22.8822.9587.1470forward
CNT30410045Trifolium pratensePapaver somniferum21.5722.392.4266reverse complement
CNT3056201Trifolium pratenseAmborella trichopoda20.2620.288.7162forward

Expression of CNT30172978

Peptides detected in this lncRNA

>peptide 1 (75 aa)
PSWVTPACNPSGGIKGDGTWLRICQVGLEAATCWPAHSKLRVDQCILGEGLRFIGPRQEGTASGWLHRAANTSPS*

Sequence

>CNT30172978
GCCGAGTTGGGTAACTCCAGCTTGTAACCCAAGTGGGGGCATTAAGGGTGACGGAACATGGCTTAGGATTTGCCAGGTTGGGTTGGAGGCTGCGACATGT
TGGCCTGCCCACTCCAAGTTGAGAGTTGATCAATGTATCCTAGGCGAAGGCCTGAGATTCATTGGTCCTAGACAAGAGGGCACTGCGTCAGGCTGGCTTC
ACAGAGCAGCGAACACCTCTCCCTCTTGACAGTGGAGGGATAACAGGCCTCTGCACTTTCCAGCCCACAATGCCTGGTGAGCCTAGCCACTTGAACCATC
ACTTTT