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Detailed information on CNT30379424


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618136Manihot esculentaSesamum indicum24.0912.8389.0473reverse complement
CNT30591720Manihot esculentaMusa acuminata26.0724.7689.8779forward
CNT30172978Manihot esculentaTrifolium pratense27.7227.4588.184forward
CNT3060682Manihot esculentaArabidopsis lyrata21.7821.4386.3666forward
CNT30408305Manihot esculentaPapaver somniferum21.7822.8489.3966reverse complement

Expression of CNT30379424

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PSSVARACHPSGGYEVMGRCSSPGGWIRFG*

Sequence

>CNT30379424
GCCGAGCTCAGTAGCGCGGGCTTGTCACCCAAGTGGGGGCTATGAGGTGATGGGACGTTGTTCCAGCCCAGGAGGTTGGATTCGGTTTGGCTAATTTCTG
GCTTGCCCATTCCAAGCTTGGAGTTGAACCATGGGAATCAAGCGAAGGCTTGGCTCTCCTGATTCCTAGAGCAGAGGGTACCGCGTCAGGCTGGCTTCAC
AGAGCAGCGACCACCTCTCGCTCCTGGCAGTGGAAGGATTACAGGCCGTTGCCACACGAGTCCGCATAGCCGGATGGGTTGCCTAATTTGGACCGTCACC
TTT