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Detailed information on CNT30566737


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617951Actinidia chinensisSesamum indicum52.2113.7486.15130reverse complement
CNT30632205Actinidia chinensisVigna unguiculata20.488.292.1651reverse complement
CNT3044357Actinidia chinensisPrunus dulcis60.2449.3483.33150reverse complement
CNT30158859Actinidia chinensisPistacia vera37.3532.487.193forward
CNT3092489Actinidia chinensisSolanum tuberosum36.1430.384.4490reverse complement
CNT30591720Actinidia chinensisMusa acuminata31.7324.7691.1479reverse complement
CNT30509042Actinidia chinensisSolanum lycopersicum35.3428.7687.588reverse complement
CNT30172978Actinidia chinensisTrifolium pratense26.5121.5789.3966reverse complement
CNT30597892Actinidia chinensisFraxinus excelsior29.7224.2687.8474forward
CNT30653670Actinidia chinensisRosa chinensis42.9726.0388.79107reverse complement
CNT30210362Actinidia chinensisHelianthus annuus37.7530.6288.394reverse complement
CNT30155101Actinidia chinensisPrunus persica40.5618.1786.14101reverse complement
CNT30410045Actinidia chinensisPapaver somniferum29.722591.8974forward
CNT30704539Actinidia chinensisPrunus avium36.958.5886.9692forward
CNT3050851Actinidia chinensisCucumis sativus25.320.9392.0663reverse complement

Expression of CNT30566737

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MDRMAQLSTWNGRARISNRRPNLLGSAHVQSPWCPHLGYRLALP

>peptide 2 (30 aa)
RKAPTRNPSTVKSGRFSLLCEASLTHCPPL*

Sequence

>CNT30566737
CGGAAAGCACCGACCCGTAATCCTTCCACCGTAAAGAGCGGGAGGTTTTCGCTGCTCTGTGAAGCCAGCCTGACGCATTGCCCTCCGCTCTAGGAACCAC
GAGGCCCAAACTTTCGAATGGATCGCATGGCCCAACTCTCCACTTGGAACGGGCGGGCCAGAATTAGCAACCGCAGGCCCAACCTACTGGGCTCAGCCCA
TGTCCAGTCACCTTGGTGCCCCCACTTGGGTTACAGGCTTGCGCTACCA