Detailed information on CNT3056201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377313Amborella trichopodaArabidopsis thaliana17.262090.5753forward
CNT30499584Amborella trichopodaCoffea canephora25.7325.9986.0879reverse complement
CNT30382680Amborella trichopodaManihot esculenta20.8521.1295.3164forward
CNT30526651Amborella trichopodaPhaseolus vulgaris19.5420.1393.3360forward
CNT30172978Amborella trichopodaTrifolium pratense20.220.2688.7162forward
CNT30212879Amborella trichopodaHelianthus annuus20.220.687.162forward
CNT30724636Amborella trichopodaLupinus angustifolius20.5220.7987.363forward

Expression of CNT3056201

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MREAGFTEQRLPLALGSGRITCWFLELPN*

>peptide 2 (50 aa)
MFQLACPLQVRSWLALSSRRAWLTHPYSGGKCVRLALQSSDYLSLLAVEG*

>peptide 3 (51 aa)
LSLVAWACNSSESIQGGWTVALGLVGGLPCFNWRALSKSGVGWLYRAEGLG*

Sequence

>CNT3056201
GCTGAGCCTGGTAGCATGGGCTTGTAACTCGAGCGAAAGCATACAAGGTGGCTGGACTGTGGCATTGGGGCTCGTGGGTGGGTTGCCATGTTTCAATTGG
CGTGCCCTCTCCAAGTCAGGAGTTGGTTGGCTCTATCGAGCCGAAGGGCTTGGTTGACTCATCCCTACAGTGGAGGAAAATGCGTGAGGCTGGCTTTACA
GAGCAGCGACTACCTCTCGCTCTTGGCAGTGGAAGGATAACATGTTGGTTTTTGGAATTACCCAATTAAACCCGATGAGTATCATTTCCATATGGACAAC
CACTTTT