« Back to Daucus carota search


Detailed information on CNT30625980


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501219Daucus carotaCoffea canephora25.5724.6185.978reverse complement
CNT30406606Daucus carotaBeta vulgaris25.925.5787.3479forward
CNT30526114Daucus carotaPhaseolus vulgaris25.925.9988.6179forward
CNT30711674Daucus carotaGlycine max24.2624.3487.8474forward
CNT30587665Daucus carotaMusa acuminata27.2126.7787.9583forward
CNT3086859Daucus carotaVigna radiata25.926.1689.8779forward
CNT30172978Daucus carotaTrifolium pratense22.9522.8887.1470forward
CNT30203149Daucus carotaHelianthus annuus27.8727.6984.7185forward
CNT30716661Daucus carotaMalus domestica golden28.227.7487.2186forward
CNT30154450Daucus carotaPrunus persica28.228.284.8886forward
CNT30706625Daucus carotaPrunus avium28.24.4984.8886forward
CNT30644675Daucus carotaCannabis sativa25.5719.6587.1878reverse complement
CNT3030049Daucus carotaTheobroma cacao24.2624.187.8474forward

Expression of CNT30625980

Peptides detected in this lncRNA

>peptide 1 (62 aa)
LGLVAQACNPSGSYKMVGGWIGPEGWASMGLYTGLPIPSREQGHGLSAKARSSYPLKWRALR*

Sequence

>CNT30625980
GCTGGGTCTGGTAGCGCAGGCCTGTAACCCGAGTGGGAGCTATAAGATGGTTGGAGGTTGGATTGGGCCAGAAGGTTGGGCTAGCATGGGGTTATACACT
GGCCTGCCCATTCCAAGTAGGGAGCAGGGTCATGGGCTTTCGGCGAAAGCCAGGAGTTCATATCCCCTAAAGTGGAGGGCACTGCGCTAGGCTGGCTTCA
CAGAGCAGCGAACACTTCCCTCTCCTGTCGGTGGAAGGATAACAAGTCGGTTCTTCACTAGTCCATCAAACACCGGATGGGTCATTCAACCGTACAACCA
TTTTT