Detailed information on CNT3048431


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404033Prunus dulcisBeta vulgaris25.5231.7286.7398forward
CNT30526005Prunus dulcisPhaseolus vulgaris17.1921.7892.4266forward
CNT30172978Prunus dulcisTrifolium pratense17.9722.5589.8669forward
CNT30145967Prunus dulcisMedicago truncatula17.9723.4786.9669forward
CNT30704539Prunus dulcisPrunus avium87.531.3496.43336reverse complement
CNT3027366Prunus dulcisPopulus trichocarpa34.1143.0987.02131forward
CNT30723384Prunus dulcisLupinus angustifolius17.1921.7189.3966forward

Expression of CNT3048431

Peptides detected in this lncRNA

>peptide 1 (53 aa)
TLHKPSWRKLDRRAQQRELVTRVGALRCWNIVPVLAGRVRVGYLLARPFQARS*

Sequence

>CNT3048431
CACACTTCATAAACCTAGCTGGAGGAAGTTGGATCGCCGAGCTCAGCAACGTGAGCTTGTAACCCGAGTGGGGGCTTTGAGGTGCTGGAACATTGTCCCA
GTATTAGCTGGTCGGGTTCGGGTTGGCTATCTTCTGGCTCGCCCATTCCAAGCCAGGAGTTGAACCCTGTGGCATGAGCGAAGGCCCTGGGTCACTGGGT
TTCTAGAGTGGAGGGCACTGCGTAAGGCTGGCTTCACAGAGCAACGACTACCTCTCGCTCTTGGCAGTGGAAGGATAACGGGTCGGTGCCAATCGGATCC
GCCATGGCCTGCTAGGCTGTCCCAATTGAACCAAAACCTTTTTGCTTTTTTTAACCTCAAAGCTTGAAACGCCGTTAAAACAGC