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Detailed information on CNT30575700


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-142

BLAST vs NONCODE:
NONPOPT001712, E-value = 3e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524187Oryza barthiiSetaria italica24.8831.8592.79208forward
CNT30513968Oryza barthiiJuglans regia13.5227.782.3113forward
CNT30524804Oryza barthiiPhaseolus vulgaris32.8935.9580.73275forward
CNT30710265Oryza barthiiGlycine max21.7739.9181.32182forward
CNT3084561Oryza barthiiVigna radiata32.8946.4581.09275forward
CNT30248818Oryza barthiiAvena sativa37.9246.8988.64317forward
CNT3017824Oryza barthiiZea mays21.054087.5176forward
CNT30347532Oryza barthiiEragrostis tef40.0764.1889.85335forward
CNT30585285Oryza barthiiEchinochloa crusgalli24.2827.4392.61203forward
CNT30603839Oryza barthiiOryza punctata26.0813.36100218forward

Expression of CNT30575700

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SGYLPPLSTFCRSSRRSTTILALFKAAVVGIA*

>peptide 2 (78 aa)
LRILATIVNLLPLQQTVYNNFGALQGSCSWDCLRVKSMDILPCRENLRVTDWITTRARFNIASLEGKFQASQLIICHN*

>peptide 3 (85 aa)
MFTKVATASMALGGSPITCRPHGRRRDSISMILAYTFPTIRSRSFGGSSTPSSGKGTSLSRLHCFAVLMIELTICGPRPVSLRDW*

>peptide 4 (85 aa)
MNLVLDKCCTHGSDKPKPSMVLSLFVTSTTCPLLFVVLSTKAVSIFHPLGDQGKLCSPRWPQPRWHLVAHLSHADRMVGGVILFP*

Sequence

>CNT30575700
CTCAGGATACTTGCCACCATTGTCAACCTTTTGCCGCTCCAGCAGACGGTCTACAACAATTTTGGCGCTCTTCAAGGCAGCTGTAGTTGGGATTGCCTGA
GGGTCAAGAGCATGGATATTCTTCCCTGTCGGGAGAACCTTCGGGTTACGGATTGGATCACCACCAGGGCCAGGTTCAACATAGCTTCCCTCGAGGGCAA
GTTTCAAGCTTCCCAGCTCATTATCTGCCACAATTAGCTTCAAGCATTCTCCCAAGAAAGTAAACAAGGTTCTCAATTTCTCTCTGTCTGCTCTGATGAA
CTTGGTCTTGGACAAGTGTTGTACCCATGGTTCTGATAAACCAAAACCAAGCATGGTACTAAGTTTGTTTGTAACATCAACAACTTGCCCTTTGTTGTTT
GTAGTCCTCTCAACAAAGGCAGTGAGTATATTTCATCCTCTGGGCGATCAAGGGAAGCTATGTTCACCAAGGTGGCCACAGCCTCGATGGCACTTGGTGG
CTCACCTATCACATGCAGACCGCATGGTAGGAGGCGTGATTCTATTTCCATGATCTTGGCATACACCTTTCCAACAATAAGGTCACGCTCATTTGGTGGA
AGCTCCACACCTTCCTCAGGCAAGGGAACATCCTTGTCAAGATTACACTGTTTTGCAGTGCTAATGATTGAGCTCACAATCTGCGGACCACGTCCTGTGT
CCTTGAGAGATTGGTAAGAAGAGATGAGCTCTGAAAGCTGCTTGAGCCCCTTGTAGAGACCAGCATTTTCAGCTGGTGGTGTCAGGTAGCTTATGGTGTT
TGCATAGCTTCTGCGCTTGGCAACAGTTGCTTCTGA